Guide to the Human Genome
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Name: ASCL5 Sequence: fasta or formatted (313aa) NCBI GI: 239741422
Description:

PREDICTED: achaete-scute complex homolog 5

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt mRNA [313aa] PREDICTED: achaete-scute complex homolog 5 (Drosophila)
alt mRNA [313aa] PREDICTED: achaete-scute complex homolog 5 (Drosophila)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         31           2
 C cysteine            2.2          7           1
 D aspartate           3.5         11           1
 E glutamate           7.0         22           2
 F phenylalanine       3.5         11           1
 G glycine             9.9         31           2
 H histidine           1.0          3           1
 I isoleucine          1.0          3           1
 K lysine              3.2         10           2
 L leucine             7.0         22           2
 M methionine          1.3          4           1
 N asparagine          2.9          9           3
 P proline            16.0         50           3
 Q glutamine           3.5         11           1
 R arginine            8.9         28           2
 S serine              8.3         26           2
 T threonine           2.6          8           1
 V valine              3.8         12           1
 W tryptophan          1.3          4           1
 Y tyrosine            3.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: achaete-scute complex homolog 5 
ASCL5                 1.000   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 1.000   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL4                 0.131   achaete-scute complex-like 4 
ASCL3                 0.127   ASCL3 
ASCL2                 0.099   achaete-scute complex homolog-like 2 
ASCL1                 0.078   achaete-scute complex homolog 1 
BHLHA9                0.055   PREDICTED: basic helix-loop-helix family, member a9...
PTF1A                 0.053   pancreas specific transcription factor, 1a 
BHLHA9                0.053   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.053   PREDICTED: basic helix-loop-helix family, member a9...
LYL1                  0.052   lymphoblastic leukemia derived sequence 1 
SCXB                  0.047   scleraxis homolog B 
SCXA                  0.047   scleraxis homolog A 
HAND2                 0.045   basic helix-loop-helix transcription factor HAND2 [H...
FERD3L                0.044   nephew of atonal 3 
BHLHA15               0.044   basic helix-loop-helix family, member a15 
NEUROG1               0.041   neurogenin 1 
HAND1                 0.041   basic helix-loop-helix transcription factor HAND1 [Ho...
MYOD1                 0.039   myogenic differentiation 1 
TWIST2                0.039   twist homolog 2 
TAL2                  0.039   T-cell acute lymphocytic leukemia 2 
ATOH1                 0.038   atonal homolog 1 
TAL1                  0.038   T-cell acute lymphocytic leukemia 1 
TWIST1                0.038   twist 
FIGLA                 0.038   factor in the germline alpha 
COL4A4                0.036   alpha 4 type IV collagen precursor 
COL9A3                0.036   alpha 3 type IX collagen 
TCF15                 0.036   basic helix-loop-helix transcription factor 15 [Homo...
DIAPH2                0.034   diaphanous 2 isoform 12C 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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