Guide to the Human Genome
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Name: LOC100128956 Sequence: fasta or formatted (60aa) NCBI GI: 169168237
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {60aa} PREDICTED: hypothetical protein
alt mRNA {60aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.3         11           1
 C cysteine            3.3          2           1
 D aspartate           3.3          2           1
 E glutamate           1.7          1           1
 F phenylalanine       1.7          1           1
 G glycine            21.7         13           3
 H histidine           3.3          2           1
 I isoleucine          0.0          0           0
 K lysine              1.7          1           1
 L leucine             3.3          2           1
 M methionine          1.7          1           1
 N asparagine          0.0          0           0
 P proline             8.3          5           2
 Q glutamine           3.3          2           1
 R arginine           10.0          6           1
 S serine              8.3          5           2
 T threonine           3.3          2           1
 V valine              1.7          1           1
 W tryptophan          0.0          0           0
 Y tyrosine            5.0          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128956          1.000   PREDICTED: hypothetical protein 
LOC100128956          1.000   PREDICTED: hypothetical protein 
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
ASCL5                 0.067   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
FLJ22184              0.067   PREDICTED: hypothetical protein FLJ22184 
ASCL5                 0.067   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ANKRD60               0.067   PREDICTED: ankyrin repeat domain 60 
ASCL5                 0.067   PREDICTED: achaete-scute complex homolog 5 
ANKRD60               0.067   PREDICTED: ankyrin repeat domain 60 
ANKRD60               0.067   PREDICTED: ankyrin repeat domain 60 
LOC100134002          0.057   PREDICTED: hypothetical protein 
TAF4                  0.057   TBP-associated factor 4 
DACT3                 0.057   thymus expressed gene 3-like 
EIF2B5                0.048   eukaryotic translation initiation factor 2B, subunit...
COL11A1               0.048   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.048   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.048   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL2A1                0.048   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.048   collagen, type II, alpha 1 isoform 2 precursor [Hom...
SOX4                  0.048   SRY (sex determining region Y)-box 4 
OBSCN                 0.048   obscurin, cytoskeletal calmodulin and titin-interact...
WDR81                 0.048   PREDICTED: WD repeat domain 81 
IRX3                  0.048   iroquois homeobox 3 
SCRT1                 0.048   scratch 
LOC100129463          0.038   PREDICTED: hypothetical protein 
LOC100129463          0.038   PREDICTED: hypothetical protein 
LOC100129463          0.038   PREDICTED: hypothetical protein 
LOC100129463          0.038   PREDICTED: hypothetical protein 
FUS                   0.038   fusion (involved in t(12;16) in malignant liposarcoma...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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