Guide to the Human Genome
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Name: FREM3 Sequence: fasta or formatted (2139aa) NCBI GI: 169167211
Description:

PREDICTED: FRAS1 related extracellular matrix 3

Referenced in:

Extracellular Matrix

Other entries for this name:
alt prot [2139aa] PREDICTED: FRAS1 related extracellular matrix 3
alt mRNA [2139aa] PREDICTED: FRAS1 related extracellular matrix 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9        105           2
 C cysteine            0.7         16           1
 D aspartate           7.0        150           2
 E glutamate           6.3        134           4
 F phenylalanine       4.3         92           2
 G glycine             6.6        141           2
 H histidine           3.5         75           2
 I isoleucine          5.7        121           3
 K lysine              3.8         81           2
 L leucine            10.3        221           3
 M methionine          1.6         34           3
 N asparagine          3.6         76           2
 P proline             6.2        133           2
 Q glutamine           5.1        110           2
 R arginine            4.8        103           2
 S serine              7.2        155           3
 T threonine           7.5        161           3
 V valine              7.7        164           2
 W tryptophan          0.6         13           1
 Y tyrosine            2.5         54           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: FRAS1 related extracellular matrix 3 [Ho... 
FREM3                 1.000   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 1.000   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM2                 0.553   FRAS1-related extracellular matrix protein 2 precurs...
FREM1                 0.194   FRAS1 related extracellular matrix 1 
FRAS1                 0.153   Fraser syndrome 1 
CSPG4                 0.042   chondroitin sulfate proteoglycan 4 
SLC8A1                0.012   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A1                0.012   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.011   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.011   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A3                0.011   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.011   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.011   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.010   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A2                0.009   solute carrier family 8 member 2 
GPR98                 0.008   G protein-coupled receptor 98 precursor 
ITGB4                 0.005   integrin beta 4 isoform 2 precursor 
ITGB4                 0.005   integrin beta 4 isoform 1 precursor 
ITGB4                 0.005   integrin beta 4 isoform 3 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-4 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-10 precursor 
PCDH15                0.004   protocadherin 15 isoform CD3-2 precursor 
PCDH15                0.004   protocadherin 15 isoform CD3-1 precursor 
PCDH15                0.004   protocadherin 15 isoform CD2-2 precursor 
PCDH15                0.004   protocadherin 15 isoform CD2-1 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-9 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-8 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-7 precursor 
PCDH15                0.004   protocadherin 15 isoform CD1-2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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