Guide to the Human Genome
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Name: SLC8A3 Sequence: fasta or formatted (925aa) NCBI GI: 15147254
Description:

solute carrier family 8 (sodium/calcium exchanger), member 3 isoform A precursor

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [924aa] solute carrier family 8 (sodium/calcium exchanger), member 3 isof...
alt prot [298aa] solute carrier family 8 (sodium/calcium exchanger), member 3 isof...
alt prot [921aa] solute carrier family 8 (sodium/calcium exchanger), member 3 isof...
alt prot [284aa] solute carrier family 8 (sodium/calcium exchanger), member 3 isof...
alt prot [927aa] solute carrier family 8 (sodium/calcium exchanger), member 3 isof...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         71           3
 C cysteine            1.9         18           1
 D aspartate           5.2         48           3
 E glutamate           7.8         72           4
 F phenylalanine       6.1         56           3
 G glycine             7.7         71           3
 H histidine           2.4         22           1
 I isoleucine          7.1         66           3
 K lysine              5.4         50           2
 L leucine             8.9         82           3
 M methionine          3.0         28           2
 N asparagine          2.5         23           2
 P proline             3.7         34           2
 Q glutamine           1.9         18           2
 R arginine            3.6         33           3
 S serine              6.2         57           2
 T threonine           6.2         57           3
 V valine              8.3         77           2
 W tryptophan          1.5         14           1
 Y tyrosine            3.0         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 8 (sodium/calcium exchanger), ... 
SLC8A3                0.976   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.973   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A3                0.969   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A1                0.710   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.709   solute carrier family 8 (sodium/calcium exchanger), ...
SLC8A1                0.698   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A1                0.693   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A2                0.682   solute carrier family 8 member 2 
SLC8A3                0.306   solute carrier family 8 (sodium/calcium exchanger),...
SLC8A3                0.301   solute carrier family 8 (sodium/calcium exchanger), ...
GPR98                 0.029   G protein-coupled receptor 98 precursor 
SLC24A2               0.024   solute carrier family 24 (sodium/potassium/calcium ex...
FREM3                 0.023   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.023   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
FREM3                 0.023   PREDICTED: FRAS1 related extracellular matrix 3 [Ho...
SLC24A3               0.022   solute carrier family 24 (sodium/potassium/calcium e...
SLC24A5               0.021   solute carrier family 24, member 5 
SLC24A4               0.021   solute carrier family 24 member 4 isoform 3 
SLC24A4               0.021   solute carrier family 24 member 4 isoform 1 precurso...
SLC24A4               0.020   solute carrier family 24 member 4 isoform 2 precurso...
SLC24A1               0.020   solute carrier family 24 (sodium/potassium/calcium ex...
FREM2                 0.019   FRAS1-related extracellular matrix protein 2 precurs...
FRAS1                 0.018   Fraser syndrome 1 
ITGB4                 0.010   integrin beta 4 isoform 2 precursor 
ITGB4                 0.010   integrin beta 4 isoform 1 precursor 
ITGB4                 0.010   integrin beta 4 isoform 3 precursor 
FREM1                 0.009   FRAS1 related extracellular matrix 1 
PTPRZ1                0.005   protein tyrosine phosphatase, receptor-type, zeta1 p...
SLC24A6               0.005   solute carrier family 24 member 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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