Guide to the Human Genome
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Name: LOC100128747 Sequence: fasta or formatted (131aa) NCBI GI: 169167105
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {185aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         13           2
 C cysteine            3.8          5           1
 D aspartate           2.3          3           1
 E glutamate           5.3          7           1
 F phenylalanine       0.8          1           1
 G glycine             9.9         13           2
 H histidine           2.3          3           1
 I isoleucine          3.1          4           2
 K lysine              0.8          1           1
 L leucine             8.4         11           1
 M methionine          1.5          2           1
 N asparagine          0.0          0           0
 P proline            11.5         15           2
 Q glutamine           5.3          7           1
 R arginine            8.4         11           2
 S serine             13.0         17           1
 T threonine           7.6         10           2
 V valine              4.6          6           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100128747          0.760   PREDICTED: hypothetical protein 
LOC100129002          0.752   PREDICTED: hypothetical protein 
TTBK1                 0.045   tau tubulin kinase 1 
TBC1D10B              0.041   TBC1 domain family, member 10B 
NUP214                0.033   nucleoporin 214kDa 
COL6A6                0.024   collagen type VI alpha 6 
LOC100128682          0.024   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.024   PREDICTED: hypothetical protein LOC100128682 
LOC100128682          0.024   PREDICTED: hypothetical protein LOC100128682 
LOC730456             0.020   PREDICTED: hypothetical protein 
BAT3                  0.020   HLA-B associated transcript-3 isoform b 
BAT3                  0.020   HLA-B associated transcript-3 isoform b 
BAT3                  0.020   HLA-B associated transcript-3 isoform b 
BAT3                  0.020   HLA-B associated transcript-3 isoform a 
PLEKHO2               0.020   pleckstrin homology domain containing, family O memb...
SRCAP                 0.020   Snf2-related CBP activator protein 
RASSF7                0.016   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.016   Ras association (RalGDS/AF-6) domain family (N-term...
RASSF7                0.016   Ras association (RalGDS/AF-6) domain family (N-termin...
TLE1                  0.016   transducin-like enhancer protein 1 
MAPK8IP3              0.016   mitogen-activated protein kinase 8 interacting prote...
MAPK8IP3              0.016   mitogen-activated protein kinase 8 interacting prote...
PHLDB1                0.016   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.016   pleckstrin homology-like domain, family B, member 1...
PHLDB1                0.016   pleckstrin homology-like domain, family B, member 1 ...
APC2                  0.016   adenomatosis polyposis coli 2 
MAPK8IP2              0.016   mitogen-activated protein kinase 8 interacting protei...
MAPK8IP2              0.016   mitogen-activated protein kinase 8 interacting protei...
TXLNB                 0.012   taxilin beta 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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