Search of human proteins with 169166257

Search of human proteins with 169166257

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]           385   e-107
gi|169167103 PREDICTED: hypothetical protein [Homo sapiens]           378   e-105
gi|169167105 PREDICTED: hypothetical protein [Homo sapiens]           212   1e-55
gi|58761548 tau tubulin kinase 1 [Homo sapiens]                        43   1e-04
gi|167614488 TBC1 domain family, member 10B [Homo sapiens]             37   0.007
gi|116812616 RecQ protein-like 4 [Homo sapiens]                        34   0.082
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    33   0.11 
gi|58331144 proline rich region 18 [Homo sapiens]                      33   0.18 
gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo ...    32   0.31 
gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]            32   0.41 
gi|239747956 PREDICTED: hypothetical protein [Homo sapiens]            32   0.41 
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]            32   0.41 
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]             32   0.41 
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]               32   0.41 
gi|55741677 SET domain containing 1A [Homo sapiens]                    31   0.53 
gi|148727255 microtubule associated serine/threonine kinase fami...    31   0.53 
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   31   0.69 
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          31   0.69 
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          31   0.69 
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]          31   0.69 
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]            31   0.69 
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]            31   0.69 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          31   0.69 
gi|154146231 DMRT-like family A2 [Homo sapiens]                        30   0.91 
gi|239754418 PREDICTED: hypothetical protein [Homo sapiens]            30   1.2  
gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo ...    30   1.2  
gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo ...    30   1.2  
gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo ...    30   1.2  
gi|119829187 alpha 1 type XVII collagen [Homo sapiens]                 30   1.2  
gi|110624774 mannose receptor, C type 2 [Homo sapiens]                 30   1.2  

>gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score =  385 bits (988), Expect = e-107
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MWPGLAHRPCLAGLQVRLAFPLLCGAGLQWPPGARLDITVRLVVAPYGLKDTRSLHVLLG 60
           MWPGLAHRPCLAGLQVRLAFPLLCGAGLQWPPGARLDITVRLVVAPYGLKDTRSLHVLLG
Sbjct: 1   MWPGLAHRPCLAGLQVRLAFPLLCGAGLQWPPGARLDITVRLVVAPYGLKDTRSLHVLLG 60

Query: 61  DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT 120
           DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT
Sbjct: 61  DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT 120

Query: 121 TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGD 180
           TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGD
Sbjct: 121 TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGD 180

Query: 181 RSRRS 185
           RSRRS
Sbjct: 181 RSRRS 185


>gi|169167103 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 185

 Score =  378 bits (971), Expect = e-105
 Identities = 182/185 (98%), Positives = 182/185 (98%)

Query: 1   MWPGLAHRPCLAGLQVRLAFPLLCGAGLQWPPGARLDITVRLVVAPYGLKDTRSLHVLLG 60
           MWPGLAHRPCLAGLQVRLAFP LCGAGLQWPPG RLDITVRLVVAPYGLKDTRSLHVLLG
Sbjct: 1   MWPGLAHRPCLAGLQVRLAFPPLCGAGLQWPPGTRLDITVRLVVAPYGLKDTRSLHVLLG 60

Query: 61  DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT 120
           DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT
Sbjct: 61  DVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQT 120

Query: 121 TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGD 180
           TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQE SAQPSQHPEGPPSPGTEAGD
Sbjct: 121 TARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEESAQPSQHPEGPPSPGTEAGD 180

Query: 181 RSRRS 185
           RSRRS
Sbjct: 181 RSRRS 185


>gi|169167105 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score =  212 bits (540), Expect = 1e-55
 Identities = 103/109 (94%), Positives = 105/109 (96%)

Query: 77  LSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGET 136
           LSLP+SPEAASGCRSPRALEMKAGPCSTQEGGRQW HGSVPLQTTARLAALGIFPCPGET
Sbjct: 23  LSLPVSPEAASGCRSPRALEMKAGPCSTQEGGRQWTHGSVPLQTTARLAALGIFPCPGET 82

Query: 137 LSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSRRS 185
           LSASLH + IPDQPVGAIIGSQEVSAQ SQHPEGPPSPGTEAGDRSRRS
Sbjct: 83  LSASLHSDLIPDQPVGAIIGSQEVSAQTSQHPEGPPSPGTEAGDRSRRS 131


>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
          Length = 1321

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 15/131 (11%)

Query: 63   SATFGHTGSSSDSPLSLPMSP-------EAASGCRSPRALEMKAG-PCSTQEGGRQWAHG 114
            S T   TGS  D+P S P +         AA+  R PR + ++   P + Q+   + +HG
Sbjct: 1121 SETLSGTGSEEDTPASEPAAALPRKSGRAAATRSRIPRPIGLRMPMPVAAQQPASR-SHG 1179

Query: 115  SVPLQTTARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSP 174
            + P   TA  + L +   PG   +A L     P QP G  +G     AQ    P  P SP
Sbjct: 1180 AAPALDTAITSRLQLQTPPGSATAADLR----PKQPPGRGLGPGR--AQAGARPPAPRSP 1233

Query: 175  GTEAGDRSRRS 185
               A   + R+
Sbjct: 1234 RLPASTSAARN 1244


>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
          Length = 808

 Score = 37.4 bits (85), Expect = 0.007
 Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 80  PMSPE--AASGCRSPRALEMKAGPCSTQEGGRQWAHG-----SVPLQTTARLAALGIF-- 130
           P SPE  A +G  + RAL   A    T+E     A G       P +T +R A   +   
Sbjct: 109 PESPEPAAVAGVETSRALAAGADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAK 168

Query: 131 ----PCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGT 176
               P PG T+++ +       Q  G    +   SA   Q PE P  PGT
Sbjct: 169 PPLAPKPGTTVASGVTARSASGQVTGGHGAAAATSASAGQAPEDPSGPGT 218


>gi|116812616 RecQ protein-like 4 [Homo sapiens]
          Length = 1208

 Score = 33.9 bits (76), Expect = 0.082
 Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 13/137 (9%)

Query: 50  KDTRSLHVLLGDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGR 109
           ++TR+L+     +  T G  G    S  SLP + E A   R       +A   S Q    
Sbjct: 36  EETRALYREYRTLKRTTGQAGGGLRSSESLPAAAEEAPEPRCWGPHLNRAATKSPQSTPG 95

Query: 110 QWAHGSVP---------LQTTARLA-ALGIFPCP-GETLSASLHCNPIPDQPVGAIIGSQ 158
           +   GSVP         L+ T +   ALG  P P G   S +    P    PV +   ++
Sbjct: 96  RSRQGSVPDYGQRLKANLKGTLQAGPALGRRPWPLGRASSKASTPKPPGTGPVPSF--AE 153

Query: 159 EVSAQPSQHPEGPPSPG 175
           +VS +P Q PE  P PG
Sbjct: 154 KVSDEPPQLPEPQPRPG 170


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
            potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 33.5 bits (75), Expect = 0.11
 Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 25/146 (17%)

Query: 60   GDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQ 119
            G      G + SSSDSPL  P+ P    G RSP+A +    P   + GG       +P  
Sbjct: 908  GHFHKALGGSLSSSDSPLLTPLQP----GARSPQAAQPSPAPPGAR-GGLGLPEHFLPPP 962

Query: 120  TTAR--LAALGIFPCPGETLSASLHCNPI------PDQP------VGAIIGSQEV----- 160
             ++R   ++ G    P   LS  L   P+      P QP       GA  G+  V     
Sbjct: 963  PSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGASPVGFTPR 1022

Query: 161  -SAQPSQHPEGPPSPGTEAGDRSRRS 185
                P  H  GPP     A  R+  S
Sbjct: 1023 GGLSPPGHSPGPPRTFPSAPPRASGS 1048


>gi|58331144 proline rich region 18 [Homo sapiens]
          Length = 295

 Score = 32.7 bits (73), Expect = 0.18
 Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 10/104 (9%)

Query: 75  SPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPG 134
           SP +LP    A + C  PR       P  T      +A  S    TTA   + G  PCP 
Sbjct: 76  SPQALPSRARAPATCAPPRPAGSGHSPART-----TYAATSAGTGTTAAGTSSGAGPCPD 130

Query: 135 ETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGP-PSPGTE 177
              SA+  C  +  + V  +I  + +  Q    P  P PSP  E
Sbjct: 131 ---SAARFCLNLTPEAV-LVIQKRHLEKQLLARPRRPFPSPSAE 170


>gi|239754651 PREDICTED: hypothetical protein XP_002346061 [Homo
           sapiens]
          Length = 368

 Score = 32.0 bits (71), Expect = 0.31
 Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 131 PCPGETLSASLHCNPIPDQPVGAIIG---SQEVSAQPSQHPEGPPSPGTEAGDRSRR 184
           P PG  LS  +     P    G   G   S E    P+Q P  PP P    G RSRR
Sbjct: 250 PSPGSVLSPHMLFGHPPSAAGGGDSGGEGSPEPLLPPAQGPPAPPRPQKARGSRSRR 306


>gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 46  PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQ 105
           P  L   R     L  VS      GSSS +P       +A S  R+      KA   S  
Sbjct: 5   PQALTVRRRQRAKLSSVSGNA--LGSSSVNPCWEQRLRKAESADRA----RDKAAFHSPH 58

Query: 106 EGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147
             GR+ AHG   L+ + R    G  P PG ++ A +  NP P
Sbjct: 59  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100


>gi|239747956 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 131

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 46  PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQ 105
           P  L   R     L  VS      GSSS +P       +A S  R+      KA   S  
Sbjct: 5   PQALTVRRRQRAKLSSVSGNA--LGSSSVNPCWEQRLRKAESADRA----RDKAAFHSPH 58

Query: 106 EGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147
             GR+ AHG   L+ + R    G  P PG ++ A +  NP P
Sbjct: 59  LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100


>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
          Length = 1516

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 46  PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLP---MSPEAASGCRSPRALEMKA-GP 101
           P  L   R+LH L   + +  G + +   +PL+ P   +S  A SG   P+A   +A G 
Sbjct: 704 PKQLAKARALHSL-SQLYSLSGCSRTQQPAPLAAPAAQVSVPAPSG--EPQASTPRATGR 760

Query: 102 CSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIPDQP 150
            + + G         PL + + + ++G F  P    SAS  C+P P+QP
Sbjct: 761 GARKAGSEPETSRPSPLGSYSPIRSVGPFG-PSTDSSASTSCSPPPEQP 808


>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
          Length = 1516

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 8/109 (7%)

Query: 46  PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLP---MSPEAASGCRSPRALEMKA-GP 101
           P  L   R+LH L   + +  G + +   +PL+ P   +S  A SG   P+A   +A G 
Sbjct: 704 PKQLAKARALHSL-SQLYSLSGCSRTQQPAPLAAPAAQVSVPAPSG--EPQASTPRATGR 760

Query: 102 CSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIPDQP 150
            + + G         PL + + + ++G F  P    SAS  C+P P+QP
Sbjct: 761 GARKAGSEPETSRPSPLGSYSPIRSVGPFG-PSTDSSASTSCSPPPEQP 808


>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
          Length = 525

 Score = 31.6 bits (70), Expect = 0.41
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query: 138 SASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEA 178
           SA+    P P     A   +   +A P   P  PP PGT+A
Sbjct: 29  SANAAATPAPGNAAAAAAAAAAAAAAPGPTPPAPPGPGTDA 69


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 20/127 (15%)

Query: 63   SATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTA 122
            S++   + SSS S  S   S  + S        E  A   S     R+     VP+ T A
Sbjct: 1036 SSSSSSSSSSSSSSSSSSSSSSSESSSEDEEEEERPAALPSASPPPRE-----VPVPTPA 1090

Query: 123  --------RLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSP 174
                    R+A   + P P +  S +    P  + P  A +       +P + P GPP+P
Sbjct: 1091 PVEVPVPERVAGSPVTPLPEQEASPARPAGPTEESPPSAPL-------RPPEPPAGPPAP 1143

Query: 175  GTEAGDR 181
                 +R
Sbjct: 1144 APRPDER 1150


>gi|148727255 microtubule associated serine/threonine kinase family
            member 4 isoform a [Homo sapiens]
          Length = 2434

 Score = 31.2 bits (69), Expect = 0.53
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 88   GCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLS---ASLHCN 144
            G  S ++ ++ + P   ++G ++      PLQ     +++   P   + LS   A  HC+
Sbjct: 1907 GIESEKSEKLSSFPSLQKDGAKEPERKEQPLQRHP--SSIPPPPLTAKDLSSPAARQHCS 1964

Query: 145  PIPDQPVGAIIGSQEVSAQPSQHPEGPPSP 174
              P    G   G++  +A+PS  P+ PP P
Sbjct: 1965 S-PSHASGREPGAKPSTAEPSSSPQDPPKP 1993


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 147  PDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSR 183
            P  P G      E     S+ P+GPP PG EAG++ R
Sbjct: 1583 PQGPRGEAGVKGEKGGVGSKGPQGPPGPGGEAGNQGR 1619


>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2790

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 131  PCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTE 177
            P  G  L+     +P+P+ P+ ++    + S  P Q P   PSP  E
Sbjct: 1304 PLEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPE 1350


>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 131  PCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTE 177
            P  G  L+     +P+P+ P+ ++    + S  P Q P   PSP  E
Sbjct: 1220 PLEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPE 1266


>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
          Length = 2706

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 131  PCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTE 177
            P  G  L+     +P+P+ P+ ++    + S  P Q P   PSP  E
Sbjct: 1220 PLEGPNLTPEASPDPLPEPPLASVEVPDKPSGSPGQPPSPAPSPVPE 1266


>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 76  PLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWA-HGS-----VPLQTTARLAALGI 129
           PL +P+   AA+ CR+    E   G   T+ GGR+   HG+       L T  R    G+
Sbjct: 332 PLGVPLQLPAAARCRASGVWETGLGSGGTRRGGRRLGFHGAQTSKGALLATATRAHGHGV 391

Query: 130 FPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQ--HPEGPPSPGTEAG 179
                  L  +LH   +  +PVG  +    VS +P+      G  SP  + G
Sbjct: 392 PGKAATVLYKALHGRGL-SRPVGRRV---HVSDRPAAGGRRAGQHSPRVQVG 439


>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 837

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 12/112 (10%)

Query: 76  PLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWA-HGS-----VPLQTTARLAALGI 129
           PL +P+   AA+ CR+    E   G   T+ GGR+   HG+       L T  R    G+
Sbjct: 332 PLGVPLQLPAAARCRASGVWETGLGSGGTRRGGRRLGFHGAQTSKGALLATATRAHGHGV 391

Query: 130 FPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQ--HPEGPPSPGTEAG 179
                  L  +LH   +  +PVG  +    VS +P+      G  SP  + G
Sbjct: 392 PGKAATVLYKALHGRGL-SRPVGRRV---HVSDRPAAGGRRAGQHSPRVQVG 439


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 30.8 bits (68), Expect = 0.69
 Identities = 32/121 (26%), Positives = 41/121 (33%), Gaps = 8/121 (6%)

Query: 64   ATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTAR 123
            A  G  G   D   + P       G R P  L +   P    + G +      P+  T R
Sbjct: 1548 AVAGPKGEKGDVGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDRG-----PIGLTGR 1602

Query: 124  LAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSR 183
                G    PGE         P P  PVG      EV  +  + P G P    +AG+R  
Sbjct: 1603 AGPPGDSGPPGEKGDPG---RPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGL 1659

Query: 184  R 184
            R
Sbjct: 1660 R 1660


>gi|154146231 DMRT-like family A2 [Homo sapiens]
          Length = 542

 Score = 30.4 bits (67), Expect = 0.91
 Identities = 32/112 (28%), Positives = 43/112 (38%), Gaps = 8/112 (7%)

Query: 75  SPLSLPMSPEAASGCRS-PRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCP 133
           SPL  P+ P +  G  S P     +  P S  E G   +    PL   ++ A      CP
Sbjct: 208 SPLPPPVKPLSPDGADSGPGTSSPEVRPGSGSENGDGESFSGSPLARASKEAGGS---CP 264

Query: 134 GETLSASLHCNPIPDQPVGAI-IGSQEVSAQPSQHPEGPPSPGTEAGDRSRR 184
           G   SA        D P  A  +GS+  S    +  E  P+PG   G   R+
Sbjct: 265 G---SAGPGGGGEEDSPGSASPLGSESGSEADKEEGEAAPAPGLGGGSGPRQ 313


>gi|239754418 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 29/112 (25%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 79  LPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLS 138
           +P +P  + GC  P  L           GGR     S       R       P PG   S
Sbjct: 8   VPTAPARSGGCTLPPLLAA---------GGRALRQDSAAAGPGQRPP----LPKPGGNSS 54

Query: 139 ASLH-----CNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSRRS 185
            S H     C P P    GA+ G   V+     H     +P  +    +RRS
Sbjct: 55  PSRHGGCAQCAPEPAPLTGALSGRLHVAFPEGYHKINRDTPSPQGASETRRS 106


>gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo
           sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 29/112 (25%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 79  LPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLS 138
           +P +P  + GC  P  L           GGR     S       R       P PG   S
Sbjct: 8   VPTAPARSGGCTLPPLLAA---------GGRALRQDSAAAGPGQRPP----LPKPGGNSS 54

Query: 139 ASLH-----CNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSRRS 185
            S H     C P P    GA+ G   V+     H     +P  +    +RRS
Sbjct: 55  PSRHGGCAQCAPEPAPLTGALSGRLHVAFPEGYHKINRDTPSPQGASETRRS 106


>gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo
           sapiens]
          Length = 106

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 29/112 (25%), Positives = 37/112 (33%), Gaps = 18/112 (16%)

Query: 79  LPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAALGIFPCPGETLS 138
           +P +P  + GC  P  L           GGR     S       R       P PG   S
Sbjct: 8   VPTAPARSGGCTLPPLLAA---------GGRALRQDSAAAGPGQRPP----LPKPGGNSS 54

Query: 139 ASLH-----CNPIPDQPVGAIIGSQEVSAQPSQHPEGPPSPGTEAGDRSRRS 185
            S H     C P P    GA+ G   V+     H     +P  +    +RRS
Sbjct: 55  PSRHGGCAQCAPEPAPLTGALSGRLHVAFPEGYHKINRDTPSPQGASETRRS 106


>gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo
           sapiens]
          Length = 133

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 108 GRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147
           GR+ AHG   L+ + R    G  P PG ++ A +  NP P
Sbjct: 63  GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 102


>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
          Length = 1497

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 32/125 (25%), Positives = 44/125 (35%), Gaps = 19/125 (15%)

Query: 67  GHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQEGGRQWAHGSVPLQTTARLAA 126
           G  GS  D  +  PM      G   PR    +AGP  + E G + A G            
Sbjct: 606 GQKGSVGDPGMEGPMGQRGREGPMGPRG---EAGPPGSGEKGERGAAGEP--------GP 654

Query: 127 LGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPS-------QHPEGPPSPGTEAG 179
            G    PG         +P P  P G + G Q +  +         + P GPP P  + G
Sbjct: 655 HGPPGVPGSVGPKGSSGSPGPQGPPGPV-GLQGLRGEVGLPGVKGDKGPMGPPGPKGDQG 713

Query: 180 DRSRR 184
           ++  R
Sbjct: 714 EKGPR 718


>gi|110624774 mannose receptor, C type 2 [Homo sapiens]
          Length = 1479

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 30/137 (21%)

Query: 67  GHTGSSSDSPLSLP----MSPEAASGCRSPRALEMKAGP-CSTQEGGRQWAHGS------ 115
           G  G+  D+ L  P    +      GC   +  +++  P C+T    ++W   S      
Sbjct: 28  GRPGAPGDAALPEPNVFLIFSHGLQGCLEAQGGQVRVTPACNTSLPAQRWKWVSRNRLFN 87

Query: 116 --------VPLQTTARLAALGIFPCPGETLSASLHCNPIPDQPVGAIIGSQEVSAQPSQH 167
                        T   A+LG++ C  E L+   HC  + DQ +  ++G++  +      
Sbjct: 88  LGTMQCLGTGWPGTNTTASLGMYECDREALNLRWHCRTLGDQ-LSLLLGARTSNIS---- 142

Query: 168 PEGPPSPGT-EAGDRSR 183
                 PGT E GD++R
Sbjct: 143 -----KPGTLERGDQTR 154


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,006,852
Number of Sequences: 37866
Number of extensions: 466938
Number of successful extensions: 2426
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 2345
Number of HSP's gapped (non-prelim): 172
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.