Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131542 Sequence: fasta or formatted (202aa) NCBI GI: 169165887
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {202aa} PREDICTED: hypothetical protein
alt mRNA {202aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.9         18           1
 C cysteine            2.0          4           1
 D aspartate           2.5          5           1
 E glutamate           4.0          8           2
 F phenylalanine       3.0          6           1
 G glycine             8.9         18           3
 H histidine           1.0          2           1
 I isoleucine          1.0          2           1
 K lysine              4.5          9           2
 L leucine             9.9         20           2
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline            14.9         30           3
 Q glutamine           3.5          7           1
 R arginine           10.4         21           2
 S serine              5.4         11           2
 T threonine           6.9         14           1
 V valine              5.9         12           2
 W tryptophan          1.5          3           1
 Y tyrosine            2.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131542          1.000   PREDICTED: hypothetical protein 
LOC100131542          1.000   PREDICTED: hypothetical protein 
LOC100133305          0.043   PREDICTED: hypothetical protein 
LOC100133305          0.043   PREDICTED: hypothetical protein 
ZC3H6                 0.040   zinc finger CCCH-type domain containing 6 
SGK493                0.038   protein kinase-like protein SgK493 
LOC100293865          0.033   PREDICTED: hypothetical protein 
LOC100289975          0.033   PREDICTED: hypothetical protein XP_002347602 
LOC100288043          0.033   PREDICTED: hypothetical protein XP_002343426 
ZNF828                0.033   zinc finger protein 828 
AGAP2                 0.033   centaurin, gamma 1 isoform PIKE-L 
LOC100131102          0.033   PREDICTED: hypothetical protein 
ZFPM1                 0.033   zinc finger protein, multitype 1 
LOC100291807          0.030   PREDICTED: hypothetical protein XP_002345507 
LOC100129307          0.030   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.030   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
LOC100129307          0.030   PREDICTED: UPF0607 protein ENSP00000383144-like [Ho...
SAMD1                 0.030   sterile alpha motif domain containing 1 
ZC3H18                0.030   zinc finger CCCH-type containing 18 
LOC100291828          0.028   PREDICTED: hypothetical protein XP_002344932 
LOC100288926          0.028   PREDICTED: hypothetical protein XP_002343509 
SRRM2                 0.025   splicing coactivator subunit SRm300 
FOXH1                 0.025   forkhead box H1 
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.025   WAS/WASL interacting protein family, member 1 
LOC100128074          0.023   PREDICTED: hypothetical protein 
LOC100131102          0.023   PREDICTED: hypothetical protein 
LOC100131102          0.023   PREDICTED: hypothetical protein 
LOC729370             0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press