Search of human proteins with 169165083

Search of human proteins with 169165083

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|169165083 PREDICTED: similar to Destrin (actin
depolymerizing factor) [Homo sapiens]
         (252 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing...   521   e-148
gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing...   519   e-148
gi|113415024 PREDICTED: similar to destrin [Homo sapiens]             367   e-102
gi|5802966 destrin isoform a [Homo sapiens]                           246   1e-65
gi|58530848 destrin isoform b [Homo sapiens]                          221   5e-58
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]                      167   1e-41
gi|14719392 cofilin 2 [Homo sapiens]                                  163   2e-40
gi|33946278 cofilin 2 [Homo sapiens]                                  163   2e-40
gi|239754918 PREDICTED: similar to destrin [Homo sapiens]             160   8e-40
gi|239749458 PREDICTED: similar to destrin [Homo sapiens]             160   8e-40
gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo ...   160   8e-40
gi|6005846 twinfilin-like protein [Homo sapiens]                       34   0.11 
gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]     34   0.14 
gi|40068475 twinfilin 1 [Homo sapiens]                                 33   0.18 
gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]       32   0.69 
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho...    30   2.0  
gi|11321593 insulin-like growth factor binding protein 6 [Homo s...    29   3.4  
gi|122937227 U2-associated SR140 protein [Homo sapiens]                29   3.4  
gi|13375926 vacuolar protein sorting 37B [Homo sapiens]                29   4.5  
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         28   5.8  
gi|4505175 KIT ligand isoform b precursor [Homo sapiens]               28   7.6  
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho...    28   7.6  
gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]         28   7.6  
gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]            28   9.9  
gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]            28   9.9  
gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo ...    28   9.9  
gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo s...    28   9.9  
gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo s...    28   9.9  

>gi|169165083 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  521 bits (1341), Expect = e-148
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP 60
           MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP
Sbjct: 1   MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP 60

Query: 61  GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE 120
           GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE
Sbjct: 61  GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE 120

Query: 121 EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDA 180
           EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDA
Sbjct: 121 EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDA 180

Query: 181 SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD 240
           SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD
Sbjct: 181 SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD 240

Query: 241 GYLIAAFEGCSV 252
           GYLIAAFEGCSV
Sbjct: 241 GYLIAAFEGCSV 252


>gi|169165465 PREDICTED: similar to Destrin (actin depolymerizing
           factor) [Homo sapiens]
          Length = 252

 Score =  519 bits (1337), Expect = e-148
 Identities = 251/252 (99%), Positives = 252/252 (100%)

Query: 1   MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP 60
           MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP
Sbjct: 1   MREGWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVP 60

Query: 61  GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE 120
           GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE
Sbjct: 61  GGQLGQPGWLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSE 120

Query: 121 EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDA 180
           EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV+ITGPFKHFVGMLPEKDCCYALYDA
Sbjct: 121 EIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDA 180

Query: 181 SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD 240
           SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD
Sbjct: 181 SFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLD 240

Query: 241 GYLIAAFEGCSV 252
           GYLIAAFEGCSV
Sbjct: 241 GYLIAAFEGCSV 252


>gi|113415024 PREDICTED: similar to destrin [Homo sapiens]
          Length = 199

 Score =  367 bits (942), Expect = e-102
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 76  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 135
           DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA
Sbjct: 23  DSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSA 82

Query: 136 DKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 195
           DKKCIIVEEGKEISAGDIGV+ITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL
Sbjct: 83  DKKCIIVEEGKEISAGDIGVSITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCL 142

Query: 196 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
           FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV
Sbjct: 143 FLWAPELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 199


>gi|5802966 destrin isoform a [Homo sapiens]
          Length = 165

 Score =  246 bits (628), Expect = 1e-65
 Identities = 129/164 (78%), Positives = 134/164 (81%), Gaps = 8/164 (4%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGV 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
           TIT PFKHFVGMLPEKDC YALYDASFETK+S R   +  FLWAPEL PLKSKMI+ S K
Sbjct: 63  TITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSK 121

Query: 216 DAIKKKF-------QANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
           DAIKKKF       QANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 122 DAIKKKFQGIKHECQANGPEDLNRACIAEKLGGSLIVAFEGCPV 165


>gi|58530848 destrin isoform b [Homo sapiens]
          Length = 148

 Score =  221 bits (563), Expect = 5e-58
 Identities = 116/149 (77%), Positives = 121/149 (81%), Gaps = 8/149 (5%)

Query: 111 IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGVTITGPFKHFVGMLPE 170
           +KV KCST EEIKKRKK VIFCLSADKKCIIVEEGKEI  GD+GVTIT PFKHFVGMLPE
Sbjct: 1   MKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPE 60

Query: 171 KDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKF-------Q 223
           KDC YALYDASFETK+S R   +  FLWAPEL PLKSKMI+ S KDAIKKKF       Q
Sbjct: 61  KDCRYALYDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQ 119

Query: 224 ANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
           ANGPEDLN ACIAEKL G LI AFEGC V
Sbjct: 120 ANGPEDLNRACIAEKLGGSLIVAFEGCPV 148


>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
          Length = 166

 Score =  167 bits (422), Expect = 1e-41
 Identities = 92/162 (56%), Positives = 113/162 (69%), Gaps = 9/162 (5%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGV V+D V  +F D+KV K ST EE+KKRKK V+FCLS DKK II+EEGKEI  GD+G 
Sbjct: 3   SGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQ 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
           T+  P+  FV MLP+KDC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 216 DAIKKK-------FQANGPEDLNWAC-IAEKLDGYLIAAFEG 249
           DAIKKK        QAN  E++   C +AEKL G  + + EG
Sbjct: 122 DAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEG 163


>gi|14719392 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  163 bits (412), Expect = 2e-40
 Identities = 90/162 (55%), Positives = 112/162 (69%), Gaps = 9/162 (5%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGV V DEV  +F D+KV K ST EEIKKRKK V+FCLS DK+ IIVEE K+I  GDIG 
Sbjct: 3   SGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGD 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
           T+  P+  FV +LP  DC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 216 DAIKKKF-------QANGPEDL-NWACIAEKLDGYLIAAFEG 249
           DAIKKKF       Q NG +D+ + + + EKL G ++ + EG
Sbjct: 122 DAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEG 163


>gi|33946278 cofilin 2 [Homo sapiens]
          Length = 166

 Score =  163 bits (412), Expect = 2e-40
 Identities = 90/162 (55%), Positives = 112/162 (69%), Gaps = 9/162 (5%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGV V DEV  +F D+KV K ST EEIKKRKK V+FCLS DK+ IIVEE K+I  GDIG 
Sbjct: 3   SGVTVNDEVIKVFNDMKVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGD 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCK 215
           T+  P+  FV +LP  DC YALYDA++ETK+S +   V +F WAPE  PLKSKMI+ S K
Sbjct: 63  TVEDPYTSFVKLLPLNDCRYALYDATYETKESKKEDLVFIF-WAPESAPLKSKMIYASSK 121

Query: 216 DAIKKKF-------QANGPEDL-NWACIAEKLDGYLIAAFEG 249
           DAIKKKF       Q NG +D+ + + + EKL G ++ + EG
Sbjct: 122 DAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLGGNVVVSLEG 163


>gi|239754918 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  160 bits (406), Expect = 8e-40
 Identities = 78/92 (84%), Positives = 82/92 (89%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKS 187
           TITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|239749458 PREDICTED: similar to destrin [Homo sapiens]
          Length = 103

 Score =  160 bits (406), Expect = 8e-40
 Identities = 78/92 (84%), Positives = 82/92 (89%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKS 187
           TITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|239743590 PREDICTED: hypothetical protein XP_002342890 [Homo
           sapiens]
          Length = 103

 Score =  160 bits (406), Expect = 8e-40
 Identities = 78/92 (84%), Positives = 82/92 (89%)

Query: 96  SGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIGV 155
           SGVQVADEVC IF D+KV KCST EEIKKRKK VIFCL AD+KCIIVEEGKEI  GD+GV
Sbjct: 3   SGVQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLGADEKCIIVEEGKEILVGDVGV 62

Query: 156 TITGPFKHFVGMLPEKDCCYALYDASFETKKS 187
           TITGPFKHFVGMLPEKDC  ALYDASFETK+S
Sbjct: 63  TITGPFKHFVGMLPEKDCRCALYDASFETKES 94


>gi|6005846 twinfilin-like protein [Homo sapiens]
          Length = 349

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 167 MLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANG 226
           +L  +  CY LY    +  +    LF+    W+P+  P++ KM++ + +  +KK+F    
Sbjct: 60  LLDAQQPCYLLYRLDSQNAQGFEWLFLA---WSPDNSPVRLKMLYAATRATVKKEFGGGH 116

Query: 227 PEDLNWACIAEKL 239
            +D  +  + + L
Sbjct: 117 IKDELFGTVKDDL 129


>gi|114431216 tumor protein p53 inducible protein 13 [Homo sapiens]
          Length = 393

 Score = 33.9 bits (76), Expect = 0.14
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 6   FPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAGSPGFLLAGK-QALVPGGQL 64
           FPS+    L     +  + G  S  P  PTV LL      G+PG   + + +A VP GQ 
Sbjct: 222 FPSASPGSLKAKQSMAGIPGRESNAPSVPTVSLLP-----GAPGGNASSRTEAQVPNGQG 276

Query: 65  GQPGWLCSKPADSVPTSGLP 84
              G +CS  A   P +  P
Sbjct: 277 SPGGCVCSSQASPAPRAAAP 296


>gi|40068475 twinfilin 1 [Homo sapiens]
          Length = 384

 Score = 33.5 bits (75), Expect = 0.18
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 167 MLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSCKDAIKKKFQANG 226
           +L +K  CY L+    +  +    +F+    W+P+   ++ KM++ + +  +KK+F    
Sbjct: 94  LLEDKQPCYILFRLDSQNAQGYEWIFIA---WSPDHSHVRQKMLYAATRATLKKEFGGGH 150

Query: 227 PEDLNWACIAE--KLDGY 242
            +D  +  + E   L GY
Sbjct: 151 IKDEVFGTVKEDVSLHGY 168


>gi|113205089 zinc finger, MYM domain containing 1 [Homo sapiens]
          Length = 1142

 Score = 31.6 bits (70), Expect = 0.69
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 98  VQVADEVCHIFCDIKVHK------------CSTSEEIKKRKKTVIFCLSADKKC 139
           ++++DE+CH  C  KV K            C+  E ++  KK V FC S    C
Sbjct: 431 MKISDELCHPKCTSKVQKVKGKSRSIKKSCCADFECLENSKKDVAFCYSCQLFC 484


>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
           sapiens]
          Length = 929

 Score = 30.0 bits (66), Expect = 2.0
 Identities = 34/123 (27%), Positives = 42/123 (34%), Gaps = 39/123 (31%)

Query: 31  PLPPTVQLLATLALAGSPGFLLAGKQALVP--------------GGQLGQPGWL---CSK 73
           PLP   Q  A  AL  SPG   +G  A  P                + G   W+   C+K
Sbjct: 814 PLPLLAQAAAGPALLPSPGPAASGASAKAPVRSVVTETVSTYVIRDEWGNQIWICPGCNK 873

Query: 74  PADSVPTSGL---------PCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKK 124
           P D  P  G          PCV +  A           E    FC     KC+  ++ KK
Sbjct: 874 PDDGSPMIGCDDCDDWYHWPCVGIMTA---------PPEEMQWFCP----KCANKKKDKK 920

Query: 125 RKK 127
            KK
Sbjct: 921 HKK 923


>gi|11321593 insulin-like growth factor binding protein 6 [Homo
          sapiens]
          Length = 240

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 21/51 (41%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 32 LPPTVQLLATLALAGSPGFLLAGKQALVPGGQLGQPGWLCSKPADSVPTSG 82
          LPP + LLA L LA SPG  LA       G Q G PG    +     P  G
Sbjct: 7  LPPLLLLLALL-LAASPGGALARCPGCGQGVQAGCPGGCVEEEDGGSPAEG 56


>gi|122937227 U2-associated SR140 protein [Homo sapiens]
          Length = 1029

 Score = 29.3 bits (64), Expect = 3.4
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 198 WA--PELPPLKSKMIFTSCKDAIKKKFQANGPEDLNWACIAEKLDGYLIAAFEGCSV 252
           WA  PE   +K + IF    + I++K   + P+DL+ A I E+LDG  +   +G  +
Sbjct: 660 WAIYPEPFLIKLQNIFLGLVNIIEEKETEDVPDDLDGAPIEEELDGAPLEDVDGIPI 716


>gi|13375926 vacuolar protein sorting 37B [Homo sapiens]
          Length = 285

 Score = 28.9 bits (63), Expect = 4.5
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 31  PLPPTVQLLATLALAGSPGFLLAGKQAL-----------VPGGQLGQPGWLCSKPADSVP 79
           PLPP +  LA  A    P    +G  A+           VP G+L  P         +VP
Sbjct: 175 PLPPRLPELAPTAPLPYPAPEASGPPAVAPRRIPPPPPPVPAGRLATPFTAAMSSGQAVP 234

Query: 80  TSGLPCVPV 88
             GL C P+
Sbjct: 235 YPGLQCPPL 243


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 46  GSPGFLLAGKQALVPGGQLGQPG 68
           G PGF   G+ AL PGG LG PG
Sbjct: 146 GDPGFP-GGRGALGPGGPLGHPG 167


>gi|4505175 KIT ligand isoform b precursor [Homo sapiens]
          Length = 273

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 19/142 (13%)

Query: 96  SGVQVADEVCHIFCD-IKVHKCSTSEEIKKRKKTVIFCLSADKKCIIVEEGKEISAGDIG 154
           S   + D++ +I  D ++  K ++S+++KK  K      S + +    EE   I    I 
Sbjct: 96  SNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK------SPEPRLFTPEEFFRIFNRSID 149

Query: 155 VTITGPFKHFVGMLPEKDCCYALYDASFETKKSGRVLFVCLFLWAPELPPLKSKMIFTSC 214
                 FK FV      DC   +  ++   +K  RV     F+    LPP+ +  +    
Sbjct: 150 A-----FKDFVVASETSDC---VVSSTLSPEKDSRVSVTKPFM----LPPVAASSLRNDS 197

Query: 215 KDAIKKKFQANGPEDLNWACIA 236
             + +K     G   L+WA +A
Sbjct: 198 SSSNRKAKNPPGDSSLHWAAMA 219


>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
           sapiens]
          Length = 1560

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 16/79 (20%)

Query: 25  GIISYQPLPPTVQLLATLALAGSPGFLLAGKQALVPGGQLGQPGWLCSKP-----ADSVP 79
           G ++ QP+P    L       GSPG   A    L P   +GQP    + P     A  VP
Sbjct: 204 GNVTLQPIPGLQGLPN-----GSPGGATAATLGLAPIQVVGQPVMALNTPTSQLLAKQVP 258

Query: 80  TSGL------PCVPVTVAA 92
            SG       P  PVT+A+
Sbjct: 259 VSGYLASAAGPSEPVTLAS 277


>gi|149192855 HLA-B associated transcript 2-like [Homo sapiens]
          Length = 2229

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 20/87 (22%)

Query: 4    GWFPSSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLA--------------------TLA 43
            G  P S    +F SL  FR Q  +     PP+  +L+                       
Sbjct: 1977 GGLPVSQSQEIFSSLQPFRSQVYMHPSLSPPSTMILSGGTALKPPYSAFPGMQPLEMVKP 2036

Query: 44   LAGSPGFLLAGKQALVPGGQLGQPGWL 70
             +GSP   ++G QALV  GQL Q   L
Sbjct: 2037 QSGSPYQPMSGNQALVYEGQLSQAAGL 2063


>gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 1179

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 8   SSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAG-SPGFLLAGKQ-----ALVPG 61
           +S+R PLFG+   F + G+   +P P  +  L+T   AG SPG L  G +      + P 
Sbjct: 330 ASFREPLFGATTSFLLVGLSLGRP-PLQLGSLSTETGAGASPGGLDVGLEETWLSPISPT 388

Query: 62  GQLGQPGWLCSKPADSVPTSGLPCVP 87
            +  +P    S P+   P  GL  VP
Sbjct: 389 PEDMEPS--PSPPSSGSPPLGLESVP 412


>gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 889

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 8   SSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAG-SPGFLLAGKQ-----ALVPG 61
           +S+R PLFG+   F + G+   +P P  +  L+T   AG SPG L  G +      + P 
Sbjct: 330 ASFREPLFGATTSFLLVGLSLGRP-PLQLGSLSTETGAGASPGGLDVGLEETWLSPISPT 388

Query: 62  GQLGQPGWLCSKPADSVPTSGLPCVP 87
            +  +P    S P+   P  GL  VP
Sbjct: 389 PEDMEPS--PSPPSSGSPPLGLESVP 412


>gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo
           sapiens]
          Length = 889

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 8   SSYRSPLFGSLLVFRVQGIISYQPLPPTVQLLATLALAG-SPGFLLAGKQ-----ALVPG 61
           +S+R PLFG+   F + G+   +P P  +  L+T   AG SPG L  G +      + P 
Sbjct: 330 ASFREPLFGATTSFLLVGLSLGRP-PLQLGSLSTETGAGASPGGLDVGLEETWLSPISPT 388

Query: 62  GQLGQPGWLCSKPADSVPTSGLPCVP 87
            +  +P    S P+   P  GL  VP
Sbjct: 389 PEDMEPS--PSPPSSGSPPLGLESVP 412


>gi|148664201 cytoskeleton associated protein 2 isoform 2 [Homo
           sapiens]
          Length = 683

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 69  WLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKT 128
           W+C    + + TS +  +         +G Q  +E+ H   DI   K      + +    
Sbjct: 464 WICLALIEPI-TSPIENIIAIYEKAILAGAQPIEEMRHTIVDILTMKSQEKANLGE---- 518

Query: 129 VIFCLSADKKCIIVEEGKEISAGDIGVTI 157
                + +K C   EE KE+S  D GV +
Sbjct: 519 -----NMEKSCASKEEVKEVSIEDTGVDV 542


>gi|148664244 cytoskeleton associated protein 2 isoform 1 [Homo
           sapiens]
          Length = 682

 Score = 27.7 bits (60), Expect = 9.9
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 69  WLCSKPADSVPTSGLPCVPVTVAAKTDSGVQVADEVCHIFCDIKVHKCSTSEEIKKRKKT 128
           W+C    + + TS +  +         +G Q  +E+ H   DI   K      + +    
Sbjct: 463 WICLALIEPI-TSPIENIIAIYEKAILAGAQPIEEMRHTIVDILTMKSQEKANLGE---- 517

Query: 129 VIFCLSADKKCIIVEEGKEISAGDIGVTI 157
                + +K C   EE KE+S  D GV +
Sbjct: 518 -----NMEKSCASKEEVKEVSIEDTGVDV 541


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,857,998
Number of Sequences: 37866
Number of extensions: 522708
Number of successful extensions: 1146
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 32
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.