Guide to the Human Genome
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Name: LOC729454 Sequence: fasta or formatted (199aa) NCBI GI: 113415024
Description:

PREDICTED: similar to destrin

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [252aa] PREDICTED: similar to Destrin (actin depolymerizing factor)
alt prot [252aa] PREDICTED: similar to Destrin (actin depolymerizing factor)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         14           2
 C cysteine            6.0         12           2
 D aspartate           5.5         11           1
 E glutamate           8.0         16           2
 F phenylalanine       5.5         11           1
 G glycine             8.0         16           2
 H histidine           2.5          5           1
 I isoleucine          6.5         13           2
 K lysine             11.6         23           3
 L leucine             6.0         12           1
 M methionine          2.0          4           1
 N asparagine          1.0          2           1
 P proline             4.5          9           2
 Q glutamine           1.5          3           1
 R arginine            2.5          5           1
 S serine              7.5         15           1
 T threonine           4.0          8           1
 V valine              7.5         15           1
 W tryptophan          1.0          2           1
 Y tyrosine            1.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to destrin 
LOC729454             0.882   PREDICTED: similar to Destrin (actin depolymerizing...
LOC729454             0.879   PREDICTED: similar to Destrin (actin depolymerizing...
DSTN                  0.563   destrin isoform a 
DSTN                  0.499   destrin isoform b 
CFL1                  0.360   cofilin 1 (non-muscle) 
CFL2                  0.350   cofilin 2 
CFL2                  0.350   cofilin 2 
LOC100294015          0.344   PREDICTED: similar to destrin 
LOC100287016          0.344   PREDICTED: similar to destrin 
LOC100287016          0.344   PREDICTED: hypothetical protein XP_002342890 
TWF2                  0.023   twinfilin-like protein 
TWF1                  0.021   twinfilin 1 
ZMYM1                 0.018   zinc finger, MYM domain containing 1 
ALPK2                 0.010   heart alpha-kinase 
SR140                 0.010   U2-associated SR140 protein 
KITLG                 0.008   KIT ligand isoform b precursor 
RAI1                  0.008   retinoic acid induced 1 
CKAP2                 0.005   cytoskeleton associated protein 2 isoform 2 
CKAP2                 0.005   cytoskeleton associated protein 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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