Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294015 Sequence: fasta or formatted (103aa) NCBI GI: 239754918
Description:

PREDICTED: similar to destrin

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          6           1
 C cysteine            5.8          6           1
 D aspartate           5.8          6           1
 E glutamate          11.7         12           2
 F phenylalanine       6.8          7           2
 G glycine             6.8          7           1
 H histidine           1.0          1           1
 I isoleucine          7.8          8           2
 K lysine             10.7         11           2
 L leucine             5.8          6           1
 M methionine          2.9          3           1
 N asparagine          0.0          0           0
 P proline             2.9          3           1
 Q glutamine           1.0          1           1
 R arginine            3.9          4           1
 S serine              4.9          5           2
 T threonine           4.9          5           1
 V valine              9.7         10           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to destrin 
LOC100287016          1.000   PREDICTED: similar to destrin 
LOC100287016          1.000   PREDICTED: hypothetical protein XP_002342890 
DSTN                  0.914   destrin isoform a 
DSTN                  0.731   destrin isoform b 
LOC729454             0.726   PREDICTED: similar to Destrin (actin depolymerizing...
LOC729454             0.720   PREDICTED: similar to Destrin (actin depolymerizing...
LOC729454             0.720   PREDICTED: similar to destrin 
CFL1                  0.640   cofilin 1 (non-muscle) 
CFL2                  0.586   cofilin 2 
CFL2                  0.586   cofilin 2 
HLTF                  0.011   helicase-like transcription factor 
HLTF                  0.011   helicase-like transcription factor 
ADAMTS10              0.011   ADAM metallopeptidase with thrombospondin type 1 mot...
MYRIP                 0.005   myosin VIIA and Rab interacting protein 
NDUFS1                0.005   NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD...
TEX264                0.005   testis expressed 264 
TEX264                0.005   testis expressed 264 
ADAMTS6               0.005   ADAM metallopeptidase with thrombospondin type 1 mot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press