Guide to the Human Genome
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Name: LOC729454 Sequence: fasta or formatted (252aa) NCBI GI: 169165083
Description:

PREDICTED: similar to Destrin (actin depolymerizing factor)

Referenced in:

Cytoskeleton

Other entries for this name:
alt prot [199aa] PREDICTED: similar to destrin
alt prot [252aa] PREDICTED: similar to Destrin (actin depolymerizing factor)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         20           2
 C cysteine            5.2         13           2
 D aspartate           4.4         11           1
 E glutamate           5.2         13           2
 F phenylalanine       5.6         14           1
 G glycine             8.3         21           2
 H histidine           1.2          3           1
 I isoleucine          6.0         15           2
 K lysine              9.1         23           3
 L leucine             9.9         25           2
 M methionine          1.2          3           1
 N asparagine          0.8          2           1
 P proline             7.1         18           2
 Q glutamine           3.2          8           1
 R arginine            2.0          5           1
 S serine              7.5         19           2
 T threonine           4.4         11           1
 V valine              7.5         19           1
 W tryptophan          1.6          4           1
 Y tyrosine            2.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Destrin (actin depolymerizing... 
LOC729454             0.996   PREDICTED: similar to Destrin (actin depolymerizing...
LOC729454             0.690   PREDICTED: similar to destrin 
DSTN                  0.446   destrin isoform a 
DSTN                  0.395   destrin isoform b 
CFL1                  0.286   cofilin 1 (non-muscle) 
CFL2                  0.278   cofilin 2 
CFL2                  0.278   cofilin 2 
LOC100294015          0.272   PREDICTED: similar to destrin 
LOC100287016          0.272   PREDICTED: similar to destrin 
LOC100287016          0.272   PREDICTED: hypothetical protein XP_002342890 
TWF2                  0.018   twinfilin-like protein 
TP53I13               0.018   tumor protein p53 inducible protein 13 
TWF1                  0.016   twinfilin 1 
ZMYM1                 0.014   zinc finger, MYM domain containing 1 
TAF3                  0.010   RNA polymerase II transcription factor TAFII140 [Ho...
IGFBP6                0.008   insulin-like growth factor binding protein 6 
SR140                 0.008   U2-associated SR140 protein 
VPS37B                0.008   vacuolar protein sorting 37B 
COL4A4                0.006   alpha 4 type IV collagen precursor 
KITLG                 0.006   KIT ligand isoform b precursor 
GLTSCR1               0.006   glioma tumor suppressor candidate region gene 1 [Ho...
BAT2L                 0.006   HLA-B associated transcript 2-like 
LOC100292392          0.006   PREDICTED: hypothetical protein 
LOC100287377          0.006   PREDICTED: hypothetical protein 
LOC100287377          0.006   PREDICTED: hypothetical protein XP_002342514 
CKAP2                 0.006   cytoskeleton associated protein 2 isoform 2 
CKAP2                 0.006   cytoskeleton associated protein 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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