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Search of human proteins with 169163999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169163999 PREDICTED: hypothetical protein [Homo sapiens]
(84 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169163999 PREDICTED: hypothetical protein [Homo sapiens] 169 4e-43
gi|169164209 PREDICTED: hypothetical protein [Homo sapiens] 169 4e-43
gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo ... 169 4e-43
gi|169171347 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|98986321 gliomedin [Homo sapiens] 30 0.41
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 30 0.54
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 29 0.70
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 29 0.70
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 29 0.92
gi|51317366 myosin XVIIIB [Homo sapiens] 28 1.6
gi|91984775 regulator of telomere elongation helicase 1 isoform ... 28 1.6
gi|7706541 regulator of telomere elongation helicase 1 isoform 1... 28 1.6
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 28 2.0
gi|239756693 PREDICTED: similar to coiled-coil domain containing... 28 2.0
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 28 2.0
gi|169211642 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 28 2.0
gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo s... 28 2.0
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 28 2.0
gi|61835232 growth differentiation factor 7 preproprotein [Homo ... 28 2.0
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 27 3.5
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 27 3.5
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 27 3.5
>gi|169163999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 84
Score = 169 bits (428), Expect = 4e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 60
MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC
Sbjct: 1 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 60
Query: 61 SLGRVSPDRTPGKGSKGMEPPHTG 84
SLGRVSPDRTPGKGSKGMEPPHTG
Sbjct: 61 SLGRVSPDRTPGKGSKGMEPPHTG 84
>gi|169164209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 179
Score = 169 bits (428), Expect = 4e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 60
MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC
Sbjct: 96 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 155
Query: 61 SLGRVSPDRTPGKGSKGMEPPHTG 84
SLGRVSPDRTPGKGSKGMEPPHTG
Sbjct: 156 SLGRVSPDRTPGKGSKGMEPPHTG 179
>gi|239741571 PREDICTED: hypothetical protein XP_002342241 [Homo
sapiens]
Length = 179
Score = 169 bits (428), Expect = 4e-43
Identities = 84/84 (100%), Positives = 84/84 (100%)
Query: 1 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 60
MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC
Sbjct: 96 MGLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 155
Query: 61 SLGRVSPDRTPGKGSKGMEPPHTG 84
SLGRVSPDRTPGKGSKGMEPPHTG
Sbjct: 156 SLGRVSPDRTPGKGSKGMEPPHTG 179
>gi|169171347 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1128
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 RTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGR 64
R +RA R A R G G GA+ RR+ +GQ+ V R CS GR
Sbjct: 504 RVERAQRAAEGRGGGG----GGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGR 559
Query: 65 VSPDR-TPGK 73
S R PG+
Sbjct: 560 NSQSRHQPGR 569
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 RTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGR 64
R +RA R A R G G GA+ RR+ +GQ+ V R CS GR
Sbjct: 177 RVERAQRAAEGRGGGG----GGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGR 232
Query: 65 VSPDR-TPGK 73
S R PG+
Sbjct: 233 NSQSRHQPGR 242
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 RTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGR 64
R +RA R A R G G GA+ RR+ +GQ+ V R CS GR
Sbjct: 177 RVERAQRAAEGRGGGG----GGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGR 232
Query: 65 VSPDR-TPGK 73
S R PG+
Sbjct: 233 NSQSRHQPGR 242
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 5 RTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGR 64
R +RA R A R G G GA+ RR+ +GQ+ V R CS GR
Sbjct: 177 RVERAQRAAEGRGGGG----GGGCGAQAHRRVVGQGQVRWEGVGQAARGRRMAHHCSQGR 232
Query: 65 VSPDR-TPGK 73
S R PG+
Sbjct: 233 NSQSRHQPGR 242
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 39 RGQIGVRRVAGTPEARG-RGDGCSLGRVSPDRTPG-KGSKG 77
RG++G+ AG P RG +GD LG + PG KG KG
Sbjct: 177 RGKMGIPGAAGNPGERGEKGDHGELGLQGNEGPPGQKGEKG 217
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/53 (41%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 8 RAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGC 60
R A+ AVS A G + A GLG R R L VR AG GRG C
Sbjct: 28 RGAQAAVSGAPGGLLRGAPGLGVRGGRALLSLRPSAVR--AGGAVLSGRGSLC 78
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 45 RRVAGTPEARGR-GDGCSLGRVSPDRTPGKGSK 76
R A TP+A R GDG S +P R PG+G +
Sbjct: 156 REPARTPQAASRDGDGASPALSAPGREPGRGGR 188
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 45 RRVAGTPEARGR-GDGCSLGRVSPDRTPGKGSK 76
R A TP+A R GDG S +P R PG+G +
Sbjct: 148 REPARTPQAASRDGDGASPALSAPGREPGRGGR 180
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 28.9 bits (63), Expect = 0.92
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 2 GLGRTQRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCS 61
G+GR Q R A G G R R RGQ+ R AG +ARG G G
Sbjct: 607 GVGRWQLPGRAAAEDVAEAAAKVLEGAGPGRPR----RGQL--LRAAGLGQARGGGAGAW 660
Query: 62 L 62
L
Sbjct: 661 L 661
>gi|51317366 myosin XVIIIB [Homo sapiens]
Length = 2567
Score = 28.1 bits (61), Expect = 1.6
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 12 VAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGRVSPDRTP 71
VA+ + G GLG + L G R P+A+G G+G P
Sbjct: 229 VALKKGEEGQSIVGKGLGTPKTTELKEAEPQGKDRQGTRPQAQGPGEGV---------RP 279
Query: 72 GKGSK-GMEPPHT 83
GK K G EP +T
Sbjct: 280 GKAEKEGAEPTNT 292
>gi|91984775 regulator of telomere elongation helicase 1 isoform 2
[Homo sapiens]
Length = 1300
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 20 GTVAAAAGLGARRARRLHLRGQIGVRRVA------GTPEARGRGDGCSLGRVSP 67
G+ + AGLGA ++ ++H+ G RR A T AR RG S SP
Sbjct: 407 GSPGSPAGLGALQSYKVHIHPDAGHRRTAQRSDAWSTTAARKRGKVLSYWCFSP 460
>gi|7706541 regulator of telomere elongation helicase 1 isoform 1
[Homo sapiens]
Length = 1219
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 20 GTVAAAAGLGARRARRLHLRGQIGVRRVA------GTPEARGRGDGCSLGRVSP 67
G+ + AGLGA ++ ++H+ G RR A T AR RG S SP
Sbjct: 407 GSPGSPAGLGALQSYKVHIHPDAGHRRTAQRSDAWSTTAARKRGKVLSYWCFSP 460
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 27.7 bits (60), Expect = 2.0
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 2 GLGRTQRAARVAVSRALAGTVAAAAG--LGAR-RARRLHLRGQIGV--RRVAGTPEARGR 56
G+GR R A R AGT + G LGAR +G+ G R AG G
Sbjct: 104 GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGA 163
Query: 57 GDG--CSLGRVSPDRTPGKGSK 76
G G LGR +P G+ S+
Sbjct: 164 GTGPETPLGRHTPSCMRGQTSR 185
>gi|239756693 PREDICTED: similar to coiled-coil domain containing 92
[Homo sapiens]
Length = 272
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 7 QRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGRVS 66
QRA V LAG G AR A R Q G P +R RG+ S
Sbjct: 167 QRARGPGVGARLAGVTRDGRGGPARDAAR---SPQAGPGSEGSRPSSRKRGEAAPAPPKS 223
Query: 67 PDRTP 71
P+R P
Sbjct: 224 PNRQP 228
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 27.7 bits (60), Expect = 2.0
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 2 GLGRTQRAARVAVSRALAGTVAAAAG--LGAR-RARRLHLRGQIGV--RRVAGTPEARGR 56
G+GR R A R AGT + G LGAR +G+ G R AG G
Sbjct: 104 GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGA 163
Query: 57 GDG--CSLGRVSPDRTPGKGSK 76
G G LGR +P G+ S+
Sbjct: 164 GTGPETPLGRHTPSCMRGQTSR 185
>gi|169211642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 378
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 7 QRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGRVS 66
QRA V LAG G AR A R Q G P +R RG+ S
Sbjct: 273 QRARGPGVGARLAGVTRDGRGGPARDAAR---SPQAGPGSEGSRPSSRKRGEAAPAPPKS 329
Query: 67 PDRTP 71
P+R P
Sbjct: 330 PNRQP 334
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 27.7 bits (60), Expect = 2.0
Identities = 28/82 (34%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 2 GLGRTQRAARVAVSRALAGTVAAAAG--LGAR-RARRLHLRGQIGV--RRVAGTPEARGR 56
G+GR R A R AGT + G LGAR +G+ G R AG G
Sbjct: 104 GVGRAFRVQGTACQRPRAGTEGSRCGWCLGARGSGEAREAKGERGADPRGAAGDVGFGGA 163
Query: 57 GDG--CSLGRVSPDRTPGKGSK 76
G G LGR +P G+ S+
Sbjct: 164 GTGPETPLGRHTPSCMRGQTSR 185
>gi|169210857 PREDICTED: similar to RIKEN cDNA E130309D14 [Homo
sapiens]
Length = 378
Score = 27.7 bits (60), Expect = 2.0
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 7 QRAARVAVSRALAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGRVS 66
QRA V LAG G AR A R Q G P +R RG+ S
Sbjct: 273 QRARGPGVGARLAGVTRDGRGGPARDAAR---SPQAGPGSEGSRPSSRKRGEAAPAPPKS 329
Query: 67 PDRTP 71
P+R P
Sbjct: 330 PNRQP 334
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 39 RGQIGVRRVAGTPEARG-------------RGDGCSLGRVSPDRTPGKGSKGMEPPHTG 84
RG IG R G P A G RG LGR P TPG EP G
Sbjct: 246 RGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPKGDLGRPGPKGTPGVAGPSGEPGMPG 304
>gi|61835232 growth differentiation factor 7 preproprotein [Homo
sapiens]
Length = 450
Score = 27.7 bits (60), Expect = 2.0
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 3 LGRTQRAARVAVSRALA---------GTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEA 53
L R RA A+ ALA GT + A +G RR RR L G R G+
Sbjct: 280 LFREIRAQARALGAALASEPLPDPGTGTASPRAVIGGRRRRRTAL---AGTRTAQGSGGG 336
Query: 54 RGRGDGCSLGRVSPDRTP 71
GRG G GR R P
Sbjct: 337 AGRGHG-RRGRSRCSRKP 353
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 26 AGLGARRARRLHLRGQI-GVRRVAGTPE--ARGRGDGCSLGRVSPDRTPGKGSKG 77
AG G R L G++ G RR G E RGR GC+LG SP G + G
Sbjct: 227 AGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALG--SPPIPAGPAAPG 279
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 27.3 bits (59), Expect = 2.7
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 14/67 (20%)
Query: 18 LAGTVAAAAGLGARRARRLHLRGQIGVRRVAGTPEARGRGDGCSLGRVSPDRTPGKGSK- 76
L GT AA A R RR LR + A+ G GC+ R R PG+G +
Sbjct: 77 LEGTPRPAAPGAAPRPRRQRLRRR----------RAKVGGWGCARARGLDRRAPGEGGRS 126
Query: 77 ---GMEP 80
G+EP
Sbjct: 127 PGGGLEP 133
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 26 AGLGARRARRLHLRGQI-GVRRVAGTPE--ARGRGDGCSLGRVSPDRTPGKGSKG 77
AG G R L G++ G RR G E RGR GC+LG SP G + G
Sbjct: 321 AGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALG--SPPIPAGPAAPG 373
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 26 AGLGARRARRLHLRGQI-GVRRVAGTPE--ARGRGDGCSLGRVSPDRTPGKGSKG 77
AG G R L G++ G RR G E RGR GC+LG SP G + G
Sbjct: 321 AGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALG--SPPIPAGPAAPG 373
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 40 GQIGVRRVAGTPEARGR----GDGCSLGRVSPDRTPG-KGSKGMEPP 81
G+ G R VAG P RG+ G S G P PG KG+ G + P
Sbjct: 877 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 923
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 40 GQIGVRRVAGTPEARGR----GDGCSLGRVSPDRTPG-KGSKGMEPP 81
G+ G R VAG P RG+ G S G P PG KG+ G + P
Sbjct: 826 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 872
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 40 GQIGVRRVAGTPEARGR----GDGCSLGRVSPDRTPG-KGSKGMEPP 81
G+ G R VAG P RG+ G S G P PG KG+ G + P
Sbjct: 865 GEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP 911
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,558,309
Number of Sequences: 37866
Number of extensions: 154980
Number of successful extensions: 697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 678
Number of HSP's gapped (non-prelim): 74
length of query: 84
length of database: 18,247,518
effective HSP length: 56
effective length of query: 28
effective length of database: 16,127,022
effective search space: 451556616
effective search space used: 451556616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.