Guide to the Human Genome
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Name: LOC100133178 Sequence: fasta or formatted (163aa) NCBI GI: 169162689
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         24           2
 C cysteine            2.5          4           1
 D aspartate           1.8          3           1
 E glutamate           0.6          1           1
 F phenylalanine       4.3          7           1
 G glycine            11.0         18           3
 H histidine           2.5          4           1
 I isoleucine          0.6          1           1
 K lysine              1.2          2           1
 L leucine             8.0         13           1
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            14.1         23           3
 Q glutamine           2.5          4           1
 R arginine           12.3         20           2
 S serine             11.7         19           2
 T threonine           4.3          7           2
 V valine              3.7          6           1
 W tryptophan          2.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729912             0.997   PREDICTED: hypothetical protein 
LOC729907             0.991   PREDICTED: hypothetical protein 
LOC100132578          0.991   PREDICTED: hypothetical protein 
LOC100131251          0.031   PREDICTED: hypothetical protein 
FOXL2                 0.031   forkhead box L2 
MCTP1                 0.028   multiple C2 domains, transmembrane 1 isoform L [Hom...
HCN2                  0.028   hyperpolarization activated cyclic nucleotide-gated...
LOC100131251          0.025   PREDICTED: hypothetical protein 
LOC100293268          0.025   PREDICTED: hypothetical protein 
LMO7                  0.025   LIM domain only 7 isoform 2 
LMO7                  0.025   LIM domain only 7 isoform 1 
MEX3D                 0.025   ring finger and KH domain containing 1 
ARHGAP23              0.022   Rho GTPase activating protein 23 
LRRC38                0.022   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.022   PREDICTED: leucine rich repeat containing 38 
PRR12                 0.022   proline rich 12 
LOC100292934          0.022   PREDICTED: hypothetical protein 
LOC100287063          0.022   PREDICTED: hypothetical protein 
DNM3                  0.022   dynamin 3 isoform a 
DNM3                  0.022   dynamin 3 isoform b 
LOC100293375          0.022   PREDICTED: hypothetical protein 
ATXN2                 0.022   ataxin 2 
SHOX                  0.019   short stature homeobox isoform SHOXa 
LOC100292184          0.019   PREDICTED: hypothetical protein 
LOC100290693          0.019   PREDICTED: hypothetical protein XP_002346930 
LOC100289070          0.019   PREDICTED: hypothetical protein XP_002342806 
LOC100289070          0.019   PREDICTED: hypothetical protein 
CREBBP                0.019   CREB binding protein isoform b 
CREBBP                0.019   CREB binding protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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