Guide to the Human Genome
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Name: LOC100132578 Sequence: fasta or formatted (163aa) NCBI GI: 169162687
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         24           2
 C cysteine            2.5          4           1
 D aspartate           1.8          3           1
 E glutamate           0.6          1           1
 F phenylalanine       4.3          7           1
 G glycine            11.0         18           3
 H histidine           2.5          4           1
 I isoleucine          0.6          1           1
 K lysine              1.2          2           1
 L leucine             8.6         14           1
 M methionine          1.2          2           1
 N asparagine          0.6          1           1
 P proline            14.1         23           3
 Q glutamine           2.5          4           1
 R arginine           11.7         19           2
 S serine             11.7         19           2
 T threonine           4.3          7           2
 V valine              3.7          6           1
 W tryptophan          2.5          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC729907             1.000   PREDICTED: hypothetical protein 
LOC100133178          0.994   PREDICTED: hypothetical protein 
LOC729912             0.991   PREDICTED: hypothetical protein 
MCTP1                 0.038   multiple C2 domains, transmembrane 1 isoform L [Hom...
LOC100131251          0.032   PREDICTED: hypothetical protein 
HCN2                  0.028   hyperpolarization activated cyclic nucleotide-gated...
FOXL2                 0.028   forkhead box L2 
PRR12                 0.028   proline rich 12 
LOC100131251          0.025   PREDICTED: hypothetical protein 
DTX1                  0.025   deltex homolog 1 
LOC100293375          0.025   PREDICTED: hypothetical protein 
LOC100133794          0.025   PREDICTED: hypothetical protein, partial 
ZNF469                0.025   zinc finger protein 469 
GRID2IP               0.025   glutamate receptor, ionotropic, delta 2 (Grid2) int...
ARHGAP23              0.022   Rho GTPase activating protein 23 
LOC100293268          0.022   PREDICTED: hypothetical protein 
LOC100287063          0.022   PREDICTED: hypothetical protein 
LRRC38                0.022   PREDICTED: leucine rich repeat containing 38 
LRRC38                0.022   PREDICTED: leucine rich repeat containing 38 
LMO7                  0.022   LIM domain only 7 isoform 2 
MEX3D                 0.022   ring finger and KH domain containing 1 
LMO7                  0.022   LIM domain only 7 isoform 1 
LOC100292934          0.022   PREDICTED: hypothetical protein 
KSR1                  0.022   kinase suppressor of ras 
DNM3                  0.022   dynamin 3 isoform a 
DNM3                  0.022   dynamin 3 isoform b 
SHOX                  0.019   short stature homeobox isoform SHOXa 
LOC100292184          0.019   PREDICTED: hypothetical protein 
BSN                   0.019   bassoon protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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