BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|169162203 PREDICTED: hypothetical protein [Homo sapiens] (117 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|169162203 PREDICTED: hypothetical protein [Homo sapiens] 248 1e-66 gi|13128990 hypothetical protein LOC79000 [Homo sapiens] 30 0.31 gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70 gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70 gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 29 0.70 gi|24308227 zinc finger protein 687 [Homo sapiens] 29 0.70 gi|13129006 nucleolar protein GU2 [Homo sapiens] 29 0.91 gi|182507165 thymus expressed gene 3-like [Homo sapiens] 28 1.2 gi|72534754 ferredoxin 1-like [Homo sapiens] 28 1.6 gi|239757317 PREDICTED: hypothetical protein [Homo sapiens] 28 2.0 gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo ... 28 2.0 gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo ... 28 2.0 gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 28 2.0 gi|58219030 hypothetical protein LOC399726 [Homo sapiens] 28 2.0 gi|32479521 dishevelled 1 [Homo sapiens] 27 2.6 gi|4759050 ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho... 27 2.6 gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6 gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6 gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 27 2.6 gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo ... 27 2.6 gi|239754987 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5 gi|239749506 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5 gi|239743640 PREDICTED: hypothetical protein XP_002342920 [Homo ... 27 3.5 gi|31317236 GSK-3 binding protein FRAT1 [Homo sapiens] 27 3.5 gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5 gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5 gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] 27 4.5 gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] 27 4.5 gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens] 27 4.5 gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] 27 4.5 >gi|169162203 PREDICTED: hypothetical protein [Homo sapiens] Length = 117 Score = 248 bits (632), Expect = 1e-66 Identities = 117/117 (100%), Positives = 117/117 (100%) Query: 1 MDAGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAI 60 MDAGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAI Sbjct: 1 MDAGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAI 60 Query: 61 RGVYYNNMMVKNLAHKKHLFKPTIFPGQGKVTVSMSQQILKTHIKLLQAWLLWQPEK 117 RGVYYNNMMVKNLAHKKHLFKPTIFPGQGKVTVSMSQQILKTHIKLLQAWLLWQPEK Sbjct: 61 RGVYYNNMMVKNLAHKKHLFKPTIFPGQGKVTVSMSQQILKTHIKLLQAWLLWQPEK 117 >gi|13128990 hypothetical protein LOC79000 [Homo sapiens] Length = 357 Score = 30.4 bits (67), Expect = 0.31 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%) Query: 53 RGGPERAIRGVYYNNMMVKNLAHKKHLFKP-----TIFPGQGKVTVSMSQQILKT---HI 104 R GPE GV+ + +K + HL KP T+ PG+ K + +Q+ + H Sbjct: 3 RTGPEEEACGVWLDAAALKRRKVQTHLIKPGTKMLTLLPGERKANIYFTQRRAPSTGIHQ 62 Query: 105 KLLQAWLLWQPEK 117 + + ++ QP K Sbjct: 63 RSIASFFTLQPGK 75 >gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 3 AGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRG-GPERAI 60 A RG P AEG S C WRR R++GA R P RG G ER + Sbjct: 100 AAGSRGEPAGGRGCCTAEG---------SSCGHPWRRERRQGAATR-GPSRGPGGERRV 148 >gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 3 AGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRG-GPERAI 60 A RG P AEG S C WRR R++GA R P RG G ER + Sbjct: 100 AAGSRGEPAGGRGCCTAEG---------SSCGHPWRRERRQGAATR-GPSRGPGGERRV 148 >gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] Length = 173 Score = 29.3 bits (64), Expect = 0.70 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 3 AGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRG-GPERAI 60 A RG P AEG S C WRR R++GA R P RG G ER + Sbjct: 100 AAGSRGEPAGGRGCCTAEG---------SSCGHPWRRERRQGAATR-GPSRGPGGERRV 148 >gi|24308227 zinc finger protein 687 [Homo sapiens] Length = 1237 Score = 29.3 bits (64), Expect = 0.70 Identities = 16/50 (32%), Positives = 21/50 (42%) Query: 6 GRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGG 55 GRG A +A A+G GR + + C + T PR P GG Sbjct: 1059 GRGTTLARGSSARAQGPGRKRRQSSDSCSEEPDSTTPPAKSPRGGPGSGG 1108 >gi|13129006 nucleolar protein GU2 [Homo sapiens] Length = 737 Score = 28.9 bits (63), Expect = 0.91 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Query: 3 AGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERA 59 +GW GR S + G G GRS + G +S R+ +R + R GG +R+ Sbjct: 680 SGWSSGRSGRSGRSGGRSG-GRSGRQSRQGSRSGSRQDGRRRSGNRNRSRSGGHKRS 735 >gi|182507165 thymus expressed gene 3-like [Homo sapiens] Length = 629 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 8/54 (14%) Query: 8 GRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGA-RPRTSP--HRGGPER 58 GRP AG G GR +S RR R+RGA +PRTSP GGP R Sbjct: 233 GRPPTDSPDAG--GAGRPLDGYISALL---RRRRRRGAGQPRTSPGGADGGPRR 281 >gi|72534754 ferredoxin 1-like [Homo sapiens] Length = 183 Score = 28.1 bits (61), Expect = 1.6 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 1 MDAGWGRGRPQASLLTAGAEGTGRSKSHTLSG-----CQSDWRRTRKRGARPRTSPHRGG 55 M A RG A +L A GT ++ SG R+ + G+RP GG Sbjct: 1 MAASMARGGVSARVLLQAARGTWWNRPGGTSGSGEGVALGTTRKFQATGSRPAGEEDAGG 60 Query: 56 PER 58 PER Sbjct: 61 PER 63 >gi|239757317 PREDICTED: hypothetical protein [Homo sapiens] Length = 198 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 6/56 (10%) Query: 4 GWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERA 59 G G TAG GR K + G + W R PRTS R GP A Sbjct: 138 GGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR------GPRTSSPRAGPGAA 187 >gi|239751026 PREDICTED: hypothetical protein XP_002347678 [Homo sapiens] Length = 304 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 7 RGRPQASLLTAGAEGTGRSKSHTLSGCQSD------WRRTRKRGARPRTSP 51 RGR + +G G H+ S C+S W + R R A PR SP Sbjct: 106 RGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASP 156 >gi|239745455 PREDICTED: hypothetical protein XP_002343496 [Homo sapiens] Length = 304 Score = 27.7 bits (60), Expect = 2.0 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 6/51 (11%) Query: 7 RGRPQASLLTAGAEGTGRSKSHTLSGCQSD------WRRTRKRGARPRTSP 51 RGR + +G G H+ S C+S W + R R A PR SP Sbjct: 106 RGRGRFPCAGSGGRGARSRGCHSPSCCRSSSCAWHRWPQLRGREAEPRASP 156 >gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo sapiens] Length = 392 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/20 (60%), Positives = 13/20 (65%) Query: 38 RRTRKRGARPRTSPHRGGPE 57 R TR G PR SP RGGP+ Sbjct: 109 RGTRGGGGGPRRSPSRGGPD 128 >gi|58219030 hypothetical protein LOC399726 [Homo sapiens] Length = 136 Score = 27.7 bits (60), Expect = 2.0 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 17/75 (22%) Query: 2 DAGWGRGRPQASLLTAGAEGTGRSKSHTLSGCQSD--------W-------RRTRKRGAR 46 D G G RP A E TG+ + + G + W R TR G+ Sbjct: 29 DRGPGAARPAAR--GGAGETTGQQRPLQVPGASAAAARTRLLRWHHRVPSPRATRSPGSI 86 Query: 47 PRTSPHRGGPERAIR 61 RTSP GGP+R R Sbjct: 87 RRTSPCSGGPDRPER 101 >gi|32479521 dishevelled 1 [Homo sapiens] Length = 670 Score = 27.3 bits (59), Expect = 2.6 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%) Query: 17 AGAEGTGRSKSHTL-SGCQSDWRR----TRKRGARPRTSPHRGGP 56 AGA G+G HT SG S WR RG+ PR+ P Sbjct: 570 AGAGGSGSESDHTAPSGVGSSWRERPAGQLSRGSSPRSQASATAP 614 >gi|4759050 ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Homo sapiens] Length = 740 Score = 27.3 bits (59), Expect = 2.6 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 9 RPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPE 57 R A+ L AG +G K H+ DW + +R P P G PE Sbjct: 305 RNPANRLGAGPDGVEEIKRHSFFST-IDWNKLYRREIHPPFKPATGRPE 352 >gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] Length = 426 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 7 RGRPQASLL-----TAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIR 61 RGR Q L AG GR+ + R+ RKRG P SP G +R Sbjct: 258 RGRRQGCALGSPPIPAGPAAPGRAGERRAA------RQWRKRGGGPGVSPREGAQGEGVR 311 Query: 62 G 62 G Sbjct: 312 G 312 >gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 7 RGRPQASLL-----TAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIR 61 RGR Q L AG GR+ + R+ RKRG P SP G +R Sbjct: 352 RGRRQGCALGSPPIPAGPAAPGRAGERRAA------RQWRKRGGGPGVSPREGAQGEGVR 405 Query: 62 G 62 G Sbjct: 406 G 406 >gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] Length = 520 Score = 27.3 bits (59), Expect = 2.6 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 7 RGRPQASLL-----TAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIR 61 RGR Q L AG GR+ + R+ RKRG P SP G +R Sbjct: 352 RGRRQGCALGSPPIPAGPAAPGRAGERRAA------RQWRKRGGGPGVSPREGAQGEGVR 405 Query: 62 G 62 G Sbjct: 406 G 406 >gi|37595548 phosphoinositol 3-phosphate-binding protein-3 [Homo sapiens] Length = 1048 Score = 27.3 bits (59), Expect = 2.6 Identities = 10/19 (52%), Positives = 15/19 (78%) Query: 81 KPTIFPGQGKVTVSMSQQI 99 K +FPG+GKV +S+ +QI Sbjct: 807 KSAVFPGEGKVKMSVEEQI 825 >gi|239754987 PREDICTED: hypothetical protein [Homo sapiens] Length = 412 Score = 26.9 bits (58), Expect = 3.5 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 6 GRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPH 52 G G A +L A G GR L S+W+ R RG + SPH Sbjct: 255 GVGAAGAEILQLLALGEGRGPKQLLPSNFSEWQAHRSRGL--QNSPH 299 >gi|239749506 PREDICTED: hypothetical protein [Homo sapiens] Length = 446 Score = 26.9 bits (58), Expect = 3.5 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 6 GRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPH 52 G G A +L A G GR L S+W+ R RG + SPH Sbjct: 289 GVGAAGAEILQLLALGEGRGPKQLLPSNFSEWQAHRSRGL--QNSPH 333 >gi|239743640 PREDICTED: hypothetical protein XP_002342920 [Homo sapiens] Length = 487 Score = 26.9 bits (58), Expect = 3.5 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%) Query: 6 GRGRPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPH 52 G G A +L A G GR L S+W+ R RG + SPH Sbjct: 289 GVGAAGAEILQLLALGEGRGPKQLLPSNFSEWQAHRSRGL--QNSPH 333 >gi|31317236 GSK-3 binding protein FRAT1 [Homo sapiens] Length = 279 Score = 26.9 bits (58), Expect = 3.5 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Query: 10 PQASLLTAGAEGTGRSK-SHTLSG-CQSDWRR--------TRKRGARPRTSPHRGGPERA 59 PQA L G G G+ LSG C+ W R ++RG++P T P R Sbjct: 145 PQADL--DGPPGAGKQGIPQPLSGPCRRGWLRGAAASRRLQQRRGSQPETRTGDDDPHRL 202 Query: 60 IRGVYYNNMMVKNLAHKKH 78 ++ + + ++K + H Sbjct: 203 LQQLVLSGNLIKEAVRRLH 221 >gi|169168296 PREDICTED: hypothetical protein [Homo sapiens] Length = 359 Score = 26.6 bits (57), Expect = 4.5 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 21 GTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGV----YYNNMMVKNLAHK 76 G K+ TL GC R T ARPR + RG P + G ++ K + Sbjct: 146 GHHADKAVTLGGCP---RSTGAAFARPRVAHSRGRPPAEVEGAPPLPGKDDGSPKEAEER 202 Query: 77 KHLF-KPTIFPGQGKVTVSMSQQI 99 F KP + PG T Q++ Sbjct: 203 ARRFRKPLLPPGWSPRTTDPGQEV 226 >gi|169168044 PREDICTED: hypothetical protein [Homo sapiens] Length = 359 Score = 26.6 bits (57), Expect = 4.5 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 21 GTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGV----YYNNMMVKNLAHK 76 G K+ TL GC R T ARPR + RG P + G ++ K + Sbjct: 146 GHHADKAVTLGGCP---RSTGAAFARPRVAHSRGRPPAEVEGAPPLPGKDDGSPKEAEER 202 Query: 77 KHLF-KPTIFPGQGKVTVSMSQQI 99 F KP + PG T Q++ Sbjct: 203 ARRFRKPLLPPGWSPRTTDPGQEV 226 >gi|169167512 PREDICTED: hypothetical protein [Homo sapiens] Length = 442 Score = 26.6 bits (57), Expect = 4.5 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 8/84 (9%) Query: 21 GTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGV----YYNNMMVKNLAHK 76 G K+ TL GC R T ARPR + RG P + G ++ K + Sbjct: 229 GHHADKAVTLGGCP---RSTGAAFARPRVAHSRGRPPAEVEGAPPLPGKDDGSPKEAEER 285 Query: 77 KHLF-KPTIFPGQGKVTVSMSQQI 99 F KP + PG T Q++ Sbjct: 286 ARRFRKPLLPPGWSPRTTDPGQEV 309 >gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens] Length = 1726 Score = 26.6 bits (57), Expect = 4.5 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 9 RPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGVYYNNM 68 RP + + TG +KSH G D P + P+++I+ + N+ Sbjct: 538 RPATRVRPKALQTTGTAKSHLFDGLDDD---------EPSLANGAFMPKKSIKKLVLKNL 588 Query: 69 MVKNL-----AHKKHLFKPTIFPGQGKVTVSMSQQILKTH 103 NL ++L P+ +P G+ +S+ + + H Sbjct: 589 NNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENH 628 >gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens] Length = 937 Score = 26.6 bits (57), Expect = 4.5 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 9 RPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGVYYNNM 68 RP + + TG +KSH G D P + P+++I+ + N+ Sbjct: 555 RPATRVRPKALQTTGTAKSHLFDGLDDD---------EPSLANGAFMPKKSIKKLVLKNL 605 Query: 69 MVKNL-----AHKKHLFKPTIFPGQGKVTVSMSQQILKTH 103 NL ++L P+ +P G+ +S+ + + H Sbjct: 606 NNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENH 645 >gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens] Length = 1800 Score = 26.6 bits (57), Expect = 4.5 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 14/100 (14%) Query: 9 RPQASLLTAGAEGTGRSKSHTLSGCQSDWRRTRKRGARPRTSPHRGGPERAIRGVYYNNM 68 RP + + TG +KSH G D P + P+++I+ + N+ Sbjct: 538 RPATRVRPKALQTTGTAKSHLFDGLDDD---------EPSLANGAFMPKKSIKKLVLKNL 588 Query: 69 MVKNL-----AHKKHLFKPTIFPGQGKVTVSMSQQILKTH 103 NL ++L P+ +P G+ +S+ + + H Sbjct: 589 NNSNLFSPVNRDSENLASPSEYPENGERFSFLSKPVDENH 628 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.133 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,187,435 Number of Sequences: 37866 Number of extensions: 227440 Number of successful extensions: 767 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 29 Number of HSP's that attempted gapping in prelim test: 755 Number of HSP's gapped (non-prelim): 41 length of query: 117 length of database: 18,247,518 effective HSP length: 87 effective length of query: 30 effective length of database: 14,953,176 effective search space: 448595280 effective search space used: 448595280 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.