Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100133654 Sequence: fasta or formatted (117aa) NCBI GI: 169162203
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          8           1
 C cysteine            0.9          1           1
 D aspartate           1.7          2           1
 E glutamate           2.6          3           1
 F phenylalanine       1.7          2           1
 G glycine            11.1         13           2
 H histidine           4.3          5           1
 I isoleucine          3.4          4           1
 K lysine              8.5         10           2
 L leucine             8.5         10           2
 M methionine          3.4          4           2
 N asparagine          2.6          3           2
 P proline             6.0          7           1
 Q glutamine           6.0          7           2
 R arginine           10.3         12           2
 S serine              6.8          8           1
 T threonine           6.8          8           1
 V valine              3.4          4           1
 W tryptophan          3.4          4           1
 Y tyrosine            1.7          2           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
C1orf135              0.022   hypothetical protein LOC79000 
LOC100130255          0.018   PREDICTED: hypothetical protein 
LOC100130255          0.018   PREDICTED: hypothetical protein 
LOC100130255          0.018   PREDICTED: hypothetical protein 
ZNF687                0.018   zinc finger protein 687 
DDX50                 0.018   nucleolar protein GU2 
DACT3                 0.013   thymus expressed gene 3-like 
FDX1L                 0.013   ferredoxin 1-like 
LOC100293194          0.013   PREDICTED: hypothetical protein 
LOC100290812          0.013   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.013   PREDICTED: hypothetical protein XP_002343496 
RBMXL2                0.013   testes-specific heterogenous nuclear ribonucleoprot...
C10orf114             0.013   hypothetical protein LOC399726 
DVL1                  0.009   dishevelled 1 
RPS6KA3               0.009   ribosomal protein S6 kinase, 90kDa, polypeptide 3 [Ho...
LOC643355             0.009   PREDICTED: hypothetical protein 
LOC643355             0.009   PREDICTED: hypothetical protein 
LOC643355             0.009   PREDICTED: hypothetical protein 
PLEKHA6               0.009   phosphoinositol 3-phosphate-binding protein-3 
LOC100292572          0.009   PREDICTED: hypothetical protein 
LOC100288181          0.009   PREDICTED: hypothetical protein 
LOC100288181          0.009   PREDICTED: hypothetical protein XP_002342920 
FRAT1                 0.009   GSK-3 binding protein FRAT1 
LOC100130882          0.009   PREDICTED: hypothetical protein 
LOC100130882          0.009   PREDICTED: hypothetical protein 
LOC100130882          0.009   PREDICTED: hypothetical protein 
NUP98                 0.009   nucleoporin 98kD isoform 4 
NUP98                 0.009   nucleoporin 98kD isoform 3 
NUP98                 0.009   nucleoporin 98kD isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press