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Search of human proteins with 169161633
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]
(172 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169161633 PREDICTED: hypothetical protein [Homo sapiens] 369 e-103
gi|169161340 PREDICTED: hypothetical protein [Homo sapiens] 319 8e-88
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.019
gi|239757254 PREDICTED: hypothetical protein [Homo sapiens] 36 0.019
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 34 0.055
gi|27894359 nuclear receptor subfamily 4, group A, member 3 isof... 34 0.055
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 34 0.055
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 34 0.055
gi|10937869 survival of motor neuron 2, centromeric isoform d [H... 33 0.093
gi|13259527 survival of motor neuron 2, centromeric isoform a [H... 33 0.093
gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo... 33 0.093
gi|11415052 retinoid X receptor, beta [Homo sapiens] 33 0.093
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 33 0.093
gi|7706469 Kruppel-like factor [Homo sapiens] 33 0.12
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 33 0.16
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 33 0.16
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 33 0.16
gi|122937496 WAS/WASL interacting protein family, member 3 [Homo... 33 0.16
gi|239757968 PREDICTED: hypothetical protein [Homo sapiens] 32 0.21
gi|239753335 PREDICTED: hypothetical protein [Homo sapiens] 32 0.21
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 32 0.21
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ... 32 0.21
gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo ... 32 0.21
gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo ... 32 0.21
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 32 0.21
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 32 0.21
gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho... 32 0.21
gi|169164483 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|113414226 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
gi|113413437 PREDICTED: hypothetical protein [Homo sapiens] 32 0.27
>gi|169161633 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 369 bits (947), Expect = e-103
Identities = 172/172 (100%), Positives = 172/172 (100%)
Query: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP
Sbjct: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
Query: 61 EPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVGGHRGPTVEGLERR 120
EPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVGGHRGPTVEGLERR
Sbjct: 61 EPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVGGHRGPTVEGLERR 120
Query: 121 AQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 172
AQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI
Sbjct: 121 AQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 172
>gi|169161340 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 319 bits (817), Expect = 8e-88
Identities = 158/180 (87%), Positives = 159/180 (88%), Gaps = 15/180 (8%)
Query: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP
Sbjct: 1 MDGSLLAPRMNSSKDSLPAGRGERPLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLP 60
Query: 61 EPPPARFRGAPGLSDVCCPRLGKVEWGITEAW-GAEGFGKAW-------VRRDVGGHRGP 112
EPPPARFRGAPGLSDVCCPRLGK W G E + W VRRDVGGHRGP
Sbjct: 61 EPPPARFRGAPGLSDVCCPRLGK-------GWVGKEQRRRRWKLRAGAGVRRDVGGHRGP 113
Query: 113 TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 172
TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI
Sbjct: 114 TVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHLPFI 173
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.8 bits (81), Expect = 0.019
Identities = 38/125 (30%), Positives = 47/125 (37%), Gaps = 9/125 (7%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVG 107
G GE G + EP P RG G+ V + + G GA G A R
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP 488
Query: 108 GHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQ--TCSGPLFQGDP-----PP 160
G RGP G E+ P G R GPR + +P + GP +G P P
Sbjct: 489 GFRGPA--GPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPG 546
Query: 161 SPSKP 165
S KP
Sbjct: 547 SDGKP 551
Score = 28.1 bits (61), Expect = 3.9
Identities = 35/133 (26%), Positives = 48/133 (36%), Gaps = 23/133 (17%)
Query: 8 PRMNSSKDSLPAGRGER--PLFRGRLVLRHLHHGRNHLVNGLGAGGEAGSERSLPEPPPA 65
P+ ++ P G+G+ P RG L G L G G G G + + P P
Sbjct: 661 PKGDAGAPGAPGGKGDAGAPGERGPPGLA----GAPGLRGGAGPPGPEGGKGAAGPPGPP 716
Query: 66 RFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVGGHRGPTVEGLERRAQERV 125
G PGL + R G G + D G GP +G+ + R
Sbjct: 717 GAAGTPGLQGMPGER--------------GGLGSPGPKGDKGEPGGPGADGVPGKDGPRG 762
Query: 126 PRGTRVGGVLPGP 138
P G +G PGP
Sbjct: 763 PTGP-IGP--PGP 772
Score = 27.7 bits (60), Expect = 5.1
Identities = 36/120 (30%), Positives = 43/120 (35%), Gaps = 21/120 (17%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVG 107
G GE+G P PA RGAPG P+ + + G T GA G +
Sbjct: 1062 GDRGESGPAGPAGAPGPAGSRGAPG------PQGPRGDKGETGERGAAG---------IK 1106
Query: 108 GHRG-PTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDP----PPSP 162
GHRG P G +G +G P RG PS G P PP P
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGA-IGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGP 1165
Score = 26.9 bits (58), Expect = 8.7
Identities = 36/130 (27%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVG 107
G GG G EP P GAPG GK + G G G A R
Sbjct: 645 GTGGPPGENGKPGEPGPKGDAGAPGAPG------GKGDAGAPGERGPPGLAGAPGLRGGA 698
Query: 108 GHRGPTVEGLERRAQERVPRGT------------RVGGVLPGPRRGSCKPSQTCSGPLFQ 155
G GP EG + A P G R G PGP+ +P + +
Sbjct: 699 GPPGP--EGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPG 756
Query: 156 GDPPPSPSKP 165
D P P+ P
Sbjct: 757 KDGPRGPTGP 766
>gi|239757254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 247
Score = 35.8 bits (81), Expect = 0.019
Identities = 24/70 (34%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 103 RRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSP 162
R G G + R VP VLPGPR GSC P GP PP +
Sbjct: 3 RGSTGAAAGEEAMPMRREVYLEVPSSRFSWKVLPGPRSGSCFPPSLLWGP-DSHFPPANS 61
Query: 163 SKPPQHLPFI 172
S LPF+
Sbjct: 62 SSQVAPLPFL 71
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 34.3 bits (77), Expect = 0.055
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 54 GSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRD-----VGG 108
G SLP PP G VC +G+ G +GF K V+++ +
Sbjct: 283 GESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAN 342
Query: 109 HRGPTVEGLERRAQE-RVPRGTRVGGVLPGPRRGSCK------PSQTCSGPLFQGDPPPS 161
P + R Q R + VG V R S K PS+ S PL Q PS
Sbjct: 343 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKS-PLQQEPSQPS 401
Query: 162 PSKPP 166
P PP
Sbjct: 402 PPSPP 406
>gi|27894359 nuclear receptor subfamily 4, group A, member 3 isoform
c [Homo sapiens]
Length = 443
Score = 34.3 bits (77), Expect = 0.055
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 54 GSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRD-----VGG 108
G SLP PP G VC +G+ G +GF K V+++ +
Sbjct: 272 GESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAN 331
Query: 109 HRGPTVEGLERRAQE-RVPRGTRVGGVLPGPRRGSCK------PSQTCSGPLFQGDPPPS 161
P + R Q R + VG V R S K PS+ S PL Q PS
Sbjct: 332 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKS-PLQQEPSQPS 390
Query: 162 PSKPP 166
P PP
Sbjct: 391 PPSPP 395
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 34.3 bits (77), Expect = 0.055
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 54 GSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRD-----VGG 108
G SLP PP G VC +G+ G +GF K V+++ +
Sbjct: 272 GESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAN 331
Query: 109 HRGPTVEGLERRAQE-RVPRGTRVGGVLPGPRRGSCK------PSQTCSGPLFQGDPPPS 161
P + R Q R + VG V R S K PS+ S PL Q PS
Sbjct: 332 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKS-PLQQEPSQPS 390
Query: 162 PSKPP 166
P PP
Sbjct: 391 PPSPP 395
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 34.3 bits (77), Expect = 0.055
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 13/125 (10%)
Query: 54 GSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRD-----VGG 108
G SLP PP G VC +G+ G +GF K V+++ +
Sbjct: 272 GESPSLPSPPSRSSSSGEGTCAVCGDNAACQHYGVRTCEGCKGFFKRTVQKNAKYVCLAN 331
Query: 109 HRGPTVEGLERRAQE-RVPRGTRVGGVLPGPRRGSCK------PSQTCSGPLFQGDPPPS 161
P + R Q R + VG V R S K PS+ S PL Q PS
Sbjct: 332 KNCPVDKRRRNRCQYCRFQKCLSVGMVKEVVRTDSLKGRRGRLPSKPKS-PLQQEPSQPS 390
Query: 162 PSKPP 166
P PP
Sbjct: 391 PPSPP 395
>gi|10937869 survival of motor neuron 2, centromeric isoform d [Homo
sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.093
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 135 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 169
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|13259527 survival of motor neuron 2, centromeric isoform a [Homo
sapiens]
Length = 282
Score = 33.5 bits (75), Expect = 0.093
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 135 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 169
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|4507091 survival of motor neuron 1, telomeric isoform d [Homo
sapiens]
Length = 294
Score = 33.5 bits (75), Expect = 0.093
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 135 LPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQHL 169
+PGPR G KP G F G PPP P PP L
Sbjct: 200 MPGPRLGPGKP-----GLKFNGPPPPPPPPPPHLL 229
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 33.5 bits (75), Expect = 0.093
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 96 GFGKAWVRR----DVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSG 151
G W RR D V G E++ E P G + R S P +
Sbjct: 31 GVASRWRRRRPWLDPAAAAAAAVAGGEQQTPEPEPGEAGRDG-MGDSGRDSRSPDSSSPN 89
Query: 152 PLFQGDPPPSPSKPP 166
PL QG PPPSP PP
Sbjct: 90 PLPQGVPPPSPPGPP 104
Score = 28.5 bits (62), Expect = 3.0
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 57 RSLPEPPPARFRGAPG----LSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDV 106
R L PPP G PG L +C R +G+ G +GF K +R+D+
Sbjct: 187 RGLHCPPPP---GGPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDL 237
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 33.5 bits (75), Expect = 0.093
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 105 DVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRR--GSCKPSQTCSGPLFQGDPPPSP 162
+ G VE L+++ +P+ G+LP P R G P+ P+ G PPP P
Sbjct: 487 EAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPPRPPGPQAPTSPNGRPMQGGPPPPPP 546
Query: 163 SKPP 166
PP
Sbjct: 547 PPPP 550
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 33.1 bits (74), Expect = 0.12
Identities = 37/136 (27%), Positives = 47/136 (34%), Gaps = 32/136 (23%)
Query: 48 GAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRDVG 107
G G EA E P PPPA + PG G G +R ++
Sbjct: 55 GLGAEAAPEPPPPPPPPAFYYPEPGAPPPYSAPAG-------------GLVSELLRPELD 101
Query: 108 GHRGPTVEGL------ERRAQERVPRGTRVG------GVLPGP----RRGSCKPSQTC-S 150
GP + G R + P G G+ GP R G+ P+ +C
Sbjct: 102 APLGPALHGRFLLAPPGRLVKAEPPEADGGGGYGCAPGLTRGPRGLKREGAPGPAASCMR 161
Query: 151 GPLFQGDPPPSPSKPP 166
GP G PPP P PP
Sbjct: 162 GP--GGRPPPPPDTPP 175
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 32.7 bits (73), Expect = 0.16
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 47 LGAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAW----- 101
LGA G A R E P R R P S + ++ + E + +A+
Sbjct: 37 LGANG-ASCSRGEAEEPAGRRRARPVRS-----KARRMAANVRERKRILDYNEAFNALRR 90
Query: 102 -VRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPP 160
+R D+GG R + L RRA R+ + V P PR G C + C GP +GD
Sbjct: 91 ALRHDLGGKRLSKIATL-RRAIHRIAALSLVLRASPAPR-GPCGHLE-CHGPAARGDTGD 147
Query: 161 SPSKPP 166
+ + PP
Sbjct: 148 TGASPP 153
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 32.7 bits (73), Expect = 0.16
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 47 LGAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAW----- 101
LGA G A R E P R R P S + ++ + E + +A+
Sbjct: 37 LGANG-ASCSRGEAEEPAGRRRARPVRS-----KARRMAANVRERKRILDYNEAFNALRR 90
Query: 102 -VRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPP 160
+R D+GG R + L RRA R+ + V P PR G C + C GP +GD
Sbjct: 91 ALRHDLGGKRLSKIATL-RRAIHRIAALSLVLRASPAPR-GPCGHLE-CHGPAARGDTGD 147
Query: 161 SPSKPP 166
+ + PP
Sbjct: 148 TGASPP 153
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 32.7 bits (73), Expect = 0.16
Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 47 LGAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAW----- 101
LGA G A R E P R R P S + ++ + E + +A+
Sbjct: 37 LGANG-ASCSRGEAEEPAGRRRARPVRS-----KARRMAANVRERKRILDYNEAFNALRR 90
Query: 102 -VRRDVGGHRGPTVEGLERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPP 160
+R D+GG R + L RRA R+ + V P PR G C + C GP +GD
Sbjct: 91 ALRHDLGGKRLSKIATL-RRAIHRIAALSLVLRASPAPR-GPCGHLE-CHGPAARGDTGD 147
Query: 161 SPSKPP 166
+ + PP
Sbjct: 148 TGASPP 153
>gi|122937496 WAS/WASL interacting protein family, member 3 [Homo
sapiens]
Length = 483
Score = 32.7 bits (73), Expect = 0.16
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 103 RRDVGGHRGPTVEGLERRAQE-RVPRGTRVGGVLP--GPRRGSCKPSQTCSG-----PLF 154
+RDV G G T +G RA R+P T G ++P PR G+ + + P
Sbjct: 114 QRDVAG--GKTGQGPGSRAPSPRLPNKTISGPLIPPASPRLGNTSEAHGAARTAPPRPNV 171
Query: 155 QGDPPPSPSKPPQHLP 170
PPP+P PP LP
Sbjct: 172 PAPPPPTPPPPPPPLP 187
>gi|239757968 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 16 SGGRAGSPRSLAPPAAARAEGAPG 39
>gi|239753335 PREDICTED: hypothetical protein [Homo sapiens]
Length = 113
Score = 32.3 bits (72), Expect = 0.21
Identities = 35/98 (35%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 46 GLGAGGEAGSERSLPEPPPARFRGAPGLSDVCCPRLGKVEWGITEAWGAEGFGKAWVRRD 105
G G G R PP R R PG + P G AWG G G A
Sbjct: 23 GSGQAQRPGPGRGSWRRPPRRQR--PGPAAPSPPARGAA------AWGRSGGGPA---AQ 71
Query: 106 VGGHRGPTVEGLERRA-QERVPRGTRVGGVLPGPRRGS 142
GG G GL RRA E RG GG +PG RR +
Sbjct: 72 SGGDGG----GLPRRAGAEPGGRGGGSGGTMPGGRRAA 105
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 157 SGGRAGSPRSLAPPAAARAEGAPG 180
>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
sapiens]
Length = 220
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 152 SGGRAGSPRSLAPPAAARAEGAPG 175
>gi|239747023 PREDICTED: hypothetical protein XP_002343907 [Homo
sapiens]
Length = 157
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 16 SGGRAGSPRSLAPPAAARAEGAPG 39
>gi|239747021 PREDICTED: hypothetical protein XP_002343906 [Homo
sapiens]
Length = 157
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 16 SGGRAGSPRSLAPPAAARAEGAPG 39
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 32.3 bits (72), Expect = 0.21
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 49 AGGEAGSERSLPEPPPARFRGAPG 72
+GG AGS RSL P AR GAPG
Sbjct: 142 SGGRAGSPRSLAPPAAARAEGAPG 165
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 32.3 bits (72), Expect = 0.21
Identities = 44/153 (28%), Positives = 61/153 (39%), Gaps = 27/153 (17%)
Query: 25 PLFRGRLV-----LRHL-HHGRNHLVNG----LGAGGEAGSERSLPEPP---------PA 65
P F G L + HL HHG ++++ G G + R+LP P P+
Sbjct: 124 PRFSGSLASTFLPVSHLDHHGNSNVLYGQHRFYGTQKDNFYLRNLPPQPTLLPANHNFPS 183
Query: 66 RFRGAPGLSDVCCPR-LGKVEWGITEAWGAEGFGKAWVRRDVGGHR-GPTVEGLERRAQE 123
R AP C R + E G + G + F + V +++G + G EG ER A E
Sbjct: 184 VARAAPAHPMGSCSRDRDRGEAGSLQK-GPKDFDRFLVGKELGREKAGKAAEGKERPAAE 242
Query: 124 RVPRGTRVGGVLPGPRRGSCK-----PSQTCSG 151
R VLP P G C+ P C G
Sbjct: 243 EDGGKERHKLVLPVPADGHCREGGPAPRGACEG 275
>gi|17158025 RNA pseudouridylate synthase domain containing 1 [Homo
sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 0.21
Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 5/31 (16%)
Query: 137 GPRRGSCKPSQTCSGPLFQGDPPPSPSKPPQ 167
GPR GS PS GP G PPP P+KPP+
Sbjct: 266 GPRPGS--PSALLPGP---GRPPPPPTKPPE 291
>gi|169164483 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 118 ERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPP 166
+RR R PRGTR G PG RG + +GP G PP + PP
Sbjct: 164 QRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPPSRRTPPP 211
>gi|113414226 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 118 ERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPP 166
+RR R PRGTR G PG RG + +GP G PP + PP
Sbjct: 164 QRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPPSRRTPPP 211
>gi|113413437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 324
Score = 32.0 bits (71), Expect = 0.27
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 118 ERRAQERVPRGTRVGGVLPGPRRGSCKPSQTCSGPLFQGDPPPSPSKPP 166
+RR R PRGTR G PG RG + +GP G PP + PP
Sbjct: 164 QRRRPTRRPRGTRGGARRPGV-RGQGAAAVGPTGPRPTGAPPSRRTPPP 211
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.142 0.466
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,195,951
Number of Sequences: 37866
Number of extensions: 627700
Number of successful extensions: 3730
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 3461
Number of HSP's gapped (non-prelim): 395
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.