Guide to the Human Genome
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Name: POU2AF1 Sequence: fasta or formatted (256aa) NCBI GI: 167900478
Description:

POU class 2 associating factor 1

Referenced in:

POU Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         28           2
 C cysteine            1.6          4           1
 D aspartate           2.7          7           1
 E glutamate           6.2         16           3
 F phenylalanine       1.2          3           1
 G glycine             4.3         11           1
 H histidine           2.0          5           1
 I isoleucine          1.6          4           1
 K lysine              2.0          5           1
 L leucine            10.2         26           3
 M methionine          1.6          4           1
 N asparagine          0.8          2           1
 P proline            16.0         41           2
 Q glutamine           5.5         14           1
 R arginine            3.1          8           2
 S serine              8.2         21           2
 T threonine           8.6         22           2
 V valine              7.8         20           2
 W tryptophan          1.6          4           1
 Y tyrosine            4.3         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   POU class 2 associating factor 1 
MUC2                  0.050   mucin 2 precursor 
MLL2                  0.042   myeloid/lymphoid or mixed-lineage leukemia 2 
NACA                  0.040   nascent polypeptide-associated complex alpha subuni...
TTN                   0.034   titin isoform N2-A 
MAPK7                 0.032   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.032   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.032   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.032   mitogen-activated protein kinase 7 isoform 2 
PTPN23                0.030   protein tyrosine phosphatase, non-receptor type 23 [...
CBLL1                 0.030   Cas-Br-M (murine) ecotropic retroviral transforming...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
LOC100294420          0.028   PREDICTED: similar to mucin 2 
GLTSCR1               0.028   glioma tumor suppressor candidate region gene 1 [Ho...
FLJ22184              0.028   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.028   PREDICTED: hypothetical protein LOC80164 
ZYX                   0.028   zyxin 
ZYX                   0.028   zyxin 
BAT2D1                0.028   HBxAg transactivated protein 2 
ARAP1                 0.026   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
INF2                  0.024   inverted formin 2 isoform 2 
INF2                  0.024   inverted formin 2 isoform 1 
DAB1                  0.024   disabled homolog 1 
CIC                   0.024   capicua homolog 
KRTAP4-6              0.024   PREDICTED: keratin associated protein 4.6 
LOC100132351          0.024   PREDICTED: hypothetical protein 
ARID1A                0.024   AT rich interactive domain 1A isoform a 
ARID1A                0.024   AT rich interactive domain 1A isoform b 
YLPM1                 0.024   YLP motif containing 1 
PRR12                 0.024   proline rich 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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