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Search of human proteins with 110618253
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|110618253 mitochondrial DNA-directed RNA polymerase
precursor [Homo sapiens]
(1230 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|110618253 mitochondrial DNA-directed RNA polymerase precursor... 2490 0.0
gi|224458301 family with sequence similarity 186, member A [Homo... 39 0.030
gi|221139761 zinc finger protein 853 [Homo sapiens] 39 0.040
gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens] 38 0.052
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 35 0.34
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 35 0.34
gi|39930399 tumor protein p53 inducible nuclear protein 2 [Homo ... 35 0.58
gi|10092691 tight junction protein 3 [Homo sapiens] 34 0.75
gi|210032790 hypothetical protein LOC27146 [Homo sapiens] 34 0.75
gi|39725952 angiogenic factor VG5Q [Homo sapiens] 34 0.98
gi|38158015 mastermind-like 3 [Homo sapiens] 34 0.98
gi|151301215 widely-interspaced zinc finger motifs [Homo sapiens] 33 1.3
gi|118498339 EMI domain containing 2 [Homo sapiens] 33 1.3
gi|116292168 KRAB A domain containing 1 [Homo sapiens] 33 1.7
gi|124378039 SEC16 homolog A [Homo sapiens] 32 2.9
gi|4504465 homeobox B2 [Homo sapiens] 32 2.9
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 32 3.7
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 32 3.7
gi|109637771 calpastatin isoform l [Homo sapiens] 32 3.7
gi|109637769 calpastatin isoform k [Homo sapiens] 32 3.7
gi|109637767 calpastatin isoform j [Homo sapiens] 32 3.7
gi|109637765 calpastatin isoform i [Homo sapiens] 32 3.7
gi|109637763 calpastatin isoform h [Homo sapiens] 32 3.7
gi|109637761 calpastatin isoform g [Homo sapiens] 32 3.7
gi|109637759 calpastatin isoform f [Homo sapiens] 32 3.7
gi|109637757 calpastatin isoform e [Homo sapiens] 32 3.7
gi|27765085 calpastatin isoform b [Homo sapiens] 32 3.7
gi|109637753 calpastatin isoform a [Homo sapiens] 32 3.7
gi|122114654 methyltransferase 10 domain containing [Homo sapiens] 32 3.7
gi|24415404 MDN1, midasin homolog [Homo sapiens] 32 3.7
>gi|110618253 mitochondrial DNA-directed RNA polymerase precursor
[Homo sapiens]
Length = 1230
Score = 2490 bits (6454), Expect = 0.0
Identities = 1230/1230 (100%), Positives = 1230/1230 (100%)
Query: 1 MSALCWGRGAAGLKRALRPCGRPGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHV 60
MSALCWGRGAAGLKRALRPCGRPGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHV
Sbjct: 1 MSALCWGRGAAGLKRALRPCGRPGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHV 60
Query: 61 ELLEVLQARVRQLQAESVSEVVVNRVDVARLPECGSGDGSLQPPRKVQMGAKDATPVPCG 120
ELLEVLQARVRQLQAESVSEVVVNRVDVARLPECGSGDGSLQPPRKVQMGAKDATPVPCG
Sbjct: 61 ELLEVLQARVRQLQAESVSEVVVNRVDVARLPECGSGDGSLQPPRKVQMGAKDATPVPCG 120
Query: 121 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR 180
RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR
Sbjct: 121 RWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTR 180
Query: 181 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 240
QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP
Sbjct: 181 QAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLP 240
Query: 241 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 300
LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA
Sbjct: 241 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 300
Query: 301 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 360
AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL
Sbjct: 301 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 360
Query: 361 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP 420
PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP
Sbjct: 361 PPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP 420
Query: 421 TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVV 480
TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVV
Sbjct: 421 TLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLDEREVV 480
Query: 481 RMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASD 540
RMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASD
Sbjct: 481 RMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASD 540
Query: 541 AEVPEPCLPRQYWEELGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS 600
AEVPEPCLPRQYWEELGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS
Sbjct: 541 AEVPEPCLPRQYWEELGAPEALREQPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS 600
Query: 601 RLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHS 660
RLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHS
Sbjct: 601 RLVPVLYHVYSFRNVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHS 660
Query: 661 GAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQL 720
GAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQL
Sbjct: 661 GAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQL 720
Query: 721 FQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEAL 780
FQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEAL
Sbjct: 721 FQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEAL 780
Query: 781 YRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDW 840
YRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDW
Sbjct: 781 YRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDW 840
Query: 841 LKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCME 900
LKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCME
Sbjct: 841 LKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCME 900
Query: 901 VANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVA 960
VANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVA
Sbjct: 901 VANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVA 960
Query: 961 AQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDF 1020
AQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDF
Sbjct: 961 AQVEVFRRQDAQRGMRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDF 1020
Query: 1021 PQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQ 1080
PQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQ
Sbjct: 1021 PQEFVWEASHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQ 1080
Query: 1081 PYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCY 1140
PYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCY
Sbjct: 1081 PYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCY 1140
Query: 1141 RKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILE 1200
RKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILE
Sbjct: 1141 RKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILE 1200
Query: 1201 ASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1230
ASQLKETLQAVPKPGAFDLEQVKRSTYFFS
Sbjct: 1201 ASQLKETLQAVPKPGAFDLEQVKRSTYFFS 1230
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 38.9 bits (89), Expect = 0.030
Identities = 68/307 (22%), Positives = 116/307 (37%), Gaps = 33/307 (10%)
Query: 48 EQDQDRRKDWGHVELLEVLQARVRQLQAESVSEVVVNRVDVARLPECG-----SGDGSLQ 102
+Q+Q +K W E+ + Q + QAE + + LP+ G ++
Sbjct: 874 KQEQQSQKQWQEEEMWKEEQKQATPKQAEQEEKQKQRGQEEEELPKSSLQRLEEGTQKMK 933
Query: 103 PP-----------RKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSG 151
R++Q AK P K +K +R + +++K K QM +
Sbjct: 934 TQGLLLEKENGQMRQIQKEAKHLGPHRRREKGKEKQKPERGLEDLERQIKTKDQMQMKET 993
Query: 152 EFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPS 211
+ K L + + P LS + L+D R ++ L L K + + PS
Sbjct: 994 QPKELEKMVIQTPMTLSPRWKSVLKDVQRSYEGKEFQRNLKTLENLPDEKEPISITPPPS 1053
Query: 212 GQHS---QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 268
Q+S +SGQ KC LT Q A + + Q+ + + +TL + A
Sbjct: 1054 LQYSLPGALPISGQ-----PLTKCIHLTPQ--QAQEVGITLTPQQAQAQGITLTLQQAQE 1106
Query: 269 LGWARQGAFKELVYVLFMVKDA-----GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 323
LG + + +LF + A LTP + + +QDQ G I +Q
Sbjct: 1107 LGIPLTPQQAQALEILFTPQQAQALGIPLTPQ-QTQVQGITLTPQQDQAPG-ISLTTQQA 1164
Query: 324 SQEGLKL 330
+ G+ L
Sbjct: 1165 QKLGIPL 1171
>gi|221139761 zinc finger protein 853 [Homo sapiens]
Length = 659
Score = 38.5 bits (88), Expect = 0.040
Identities = 55/248 (22%), Positives = 98/248 (39%), Gaps = 20/248 (8%)
Query: 20 CGRPGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRK-----DWGHVELLEVLQARVRQLQ 74
C G PG + +GG G PQE++ ++ G E+ E + R+LQ
Sbjct: 31 CLEDGGPGPDTLSGGSGGSESQEEEEPQERNSSPQRPAVSAPVGASEIAEETRPGQRELQ 90
Query: 75 AESVSEVVVNRVDVARLPECGSGDGSLQPPRKVQMGAKDATPVPCGRWAKILEKDKRTQQ 134
+ + + + + + P+ + QP +++ P G+ + ++ Q
Sbjct: 91 LQQLEQ----QPEPQQQPQ---HEQLQQPQPHLEL---QQQPQQDGQQQLSQLQQEKHQS 140
Query: 135 MRMQRLKAKLQMPFQSGEFKAL----TRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQ 190
+ Q LK +LQ+ Q + + +RLQ + L Q A + +Q + + Q
Sbjct: 141 VHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQAQ-EQQVLQQQEQLQQQVQ 199
Query: 191 LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 250
+LLQ+ +L Q Q Q QQ++L + LL Q L LL
Sbjct: 200 EQQLLQQQQEQLQQQQLLQQQEQLQQQQFQQQQEQLQQQQQLLLLQQQGQLQQQLLQQQQ 259
Query: 251 GQRQKRKL 258
Q Q++ L
Sbjct: 260 AQLQQQLL 267
Score = 33.5 bits (75), Expect = 1.3
Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 15/193 (7%)
Query: 38 PRRSSSASPQEQDQDRRKDWGHVELLEVLQA--RVRQLQAESVSEVVVNRVDVARLPECG 95
P++ + Q++ + H EL LQ + +QLQ + V E + +L
Sbjct: 122 PQQDGQQQLSQLQQEKHQSVHHQELKPELQLMHQQQQLQPQQVQEQQRLQQQQEQLQTQQ 181
Query: 96 SGDGS-LQPPRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPFQSGEFK 154
+ + LQ ++Q ++ ++L++ + +Q++ Q+L + Q Q +F+
Sbjct: 182 AQEQQVLQQQEQLQQQVQEQ---------QLLQQQQ--EQLQQQQLLQQ-QEQLQQQQFQ 229
Query: 155 ALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQH 214
+LQ + +LL Q G L+ Q ++ ++QL Q + L +Q Q
Sbjct: 230 QQQEQLQQQQQLLLLQQQGQLQQQLLQQQQAQLQQQLLEQQQAQLQQQLLLQQQEQLQQQ 289
Query: 215 SQAQLSGQQQRLL 227
Q QL QQQ L
Sbjct: 290 QQQQLLQQQQEQL 302
>gi|46275820 tetratricopeptide repeat domain 9B [Homo sapiens]
Length = 239
Score = 38.1 bits (87), Expect = 0.052
Identities = 46/145 (31%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 711 GRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAR 770
G+ +LQL A+G G+PAP AP P S PAR +E +R L +V
Sbjct: 86 GKYHRALLQLKAAQGARPSGLPAP---APGPTS-----SPGPARLSEEQRRLVESTEV-- 135
Query: 771 EMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGR---TYPCPPHFNHLGSDVARALLEF 827
E + L + L + R R + L +G TY F HLG D ARAL
Sbjct: 136 ECYDSLTACLLQSELVNYERVREYCLKVLEKQQGNFKATYRAGIAFYHLG-DYARALRYL 194
Query: 828 AQGRPLGPHGLDWLKIHLVNLTGLK 852
+ R P D + + LT LK
Sbjct: 195 QEARSREP--TDTNVLRYIQLTQLK 217
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 35.4 bits (80), Expect = 0.34
Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 GAAGLKRALRPCGRPGLPGKEGTAG--GVCGPRRSSSASPQEQDQDRRKDWG 58
G G K P G PGL GKEG G G+ GP S + D+ R DWG
Sbjct: 1550 GDIGFKGIQGPRGPPGLMGKEGIVGPLGILGP---SGLPGPKGDKGSRGDWG 1598
Score = 32.3 bits (72), Expect = 2.9
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 8 RGAAGLKRALRPCGRPGLPGKEGTAG 33
+G+ GLK P GRPG PG++G AG
Sbjct: 1077 QGSRGLKGPPGPQGRPGRPGQQGVAG 1102
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 35.4 bits (80), Expect = 0.34
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 40/172 (23%)
Query: 394 KTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRA----- 448
+ LQCL ++++ + SR ++ PT +E++ RK ++TLRD+ + L
Sbjct: 417 RKLQCLEQEKVEL---SRKHQEALHAPT-DHRELEQLRKEVQTLRDRLPEMLRDKASLSQ 472
Query: 449 --------------LRETKNRLEREVYEGRFSLYPFLCLLDEREVVRM------LLQVLQ 488
LR+ +RL RE+ EGR L E+E+ R LLQ LQ
Sbjct: 473 TDGPPAGSPGQDSDLRQELDRLHRELAEGRAGLQ-----AQEQELCRAQGQQEELLQRLQ 527
Query: 489 ALPAQGESFTTLARELSARTFSRHVVQRQ------RVSGQVQALQNHYRKYL 534
+ + + R LS++ QR+ +S QV LQ + + L
Sbjct: 528 EAQEREAATASQTRALSSQLEEARAAQRELEAQVSSLSRQVTQLQGQWEQRL 579
>gi|39930399 tumor protein p53 inducible nuclear protein 2 [Homo
sapiens]
Length = 220
Score = 34.7 bits (78), Expect = 0.58
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 89 ARLPECGSGDGSLQPPRKVQMGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQMPF 148
A LP+ +G L P R+ A+ A P+P A +LEK + ++++ R +A+ +
Sbjct: 128 AALPDGDLSEGELTPARREPRAARHAAPLPAR--AALLEKAGQVRRLQRARQRAE-RHAL 184
Query: 149 QSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQ 181
+ + R + PR Q + + C RQ
Sbjct: 185 SAKAVQRQNRARESRPRRSKNQSSFIYQPCQRQ 217
>gi|10092691 tight junction protein 3 [Homo sapiens]
Length = 952
Score = 34.3 bits (77), Expect = 0.75
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 713 VLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQKVAREM 772
+ DL +L QA P +P PP A + PEA + +P LRRE + + E
Sbjct: 327 ISDLASELSQA---PPSHIPPPPRHAQRSPEA--SQTDSPVESPRLRRESSVDSRTISEP 381
Query: 773 HSLRAEA-------LYRLSLAQHLRDR 792
R+E +YR+ +Q + DR
Sbjct: 382 DEQRSELPRESSYDIYRVPSSQSMEDR 408
>gi|210032790 hypothetical protein LOC27146 [Homo sapiens]
Length = 1060
Score = 34.3 bits (77), Expect = 0.75
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 6/161 (3%)
Query: 401 EKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRL--ER 458
+ Q+H+++ ++ ++ L +++ A +++ LR+ ++ L A+ ETK RL E+
Sbjct: 31 DPQMHVKMCKKIAQLTKVIYALNTRQ-DEAEASMEALREAHQEELQNAVAETKARLLQEQ 89
Query: 459 EVYEGRFSLYPFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELSARTFSRHVVQRQR 518
E L L E+ + L + +AL A+ S +E R + H +
Sbjct: 90 GCAEEEALLQRIQALESALELQKRLTE--EAL-AESASCRLETKERELRVEAEHAERVLT 146
Query: 519 VSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEELGAP 559
+S ++ L+ Y + L L S P+ LP++ E P
Sbjct: 147 LSREMLELKADYERRLQHLTSHEATPQGRLPQESPETKSEP 187
>gi|39725952 angiogenic factor VG5Q [Homo sapiens]
Length = 714
Score = 33.9 bits (76), Expect = 0.98
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 732 PAPPSEAPQPPEAHLPHSAAPARKAE-LRRELAHCQKVAREMHSL--RAEALYR--LSLA 786
P+PP P PP + P A RK E L REL C++ RE+ L E LY+ S
Sbjct: 6 PSPPRS-PPPPTSPEPELAQLRRKVEKLERELRSCKRQVREIEKLLHHTERLYQNAESNN 64
Query: 787 QHLRDRV 793
Q LR +V
Sbjct: 65 QELRTQV 71
>gi|38158015 mastermind-like 3 [Homo sapiens]
Length = 1133
Score = 33.9 bits (76), Expect = 0.98
Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 23/157 (14%)
Query: 2 SALCWGRGAAGLKRALRPCGRPGLPGKEGTAGGVC----GPRRSSSASPQEQ---DQDRR 54
S+L G AG+ P P P A G C GP S+A P+ ++ R+
Sbjct: 20 SSLNSSLGGAGIGVNNTPNSTPAAPSSNHPAAGGCGGSGGPGGGSAAVPKHSTVVERLRQ 79
Query: 55 KDWG----HVEL-LEVLQARVRQLQAESVSEV-VVNRVDVARLPECGSGDGSLQPPRKVQ 108
+ G HV QA+V QL+ E V + R R + G+G G Q P K Q
Sbjct: 80 RIEGCRRHHVNCENRYQQAQVEQLELERRDTVSLYQRTLEQRAKKSGAGTGKQQHPSKPQ 139
Query: 109 MGAKDATPVPCGRWAKILEKDKRTQQMRMQRLKAKLQ 145
A+ A+ E+ T M + +K KL+
Sbjct: 140 QDAEAAS----------AEQRNHTLIMLQETVKRKLE 166
>gi|151301215 widely-interspaced zinc finger motifs [Homo sapiens]
Length = 794
Score = 33.5 bits (75), Expect = 1.3
Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 30/136 (22%)
Query: 654 PWTSPHSGAFLLSPTKLMRTVEGATQHQ-----ELLETCPPTALHGALDALTQLGNCAWR 708
PW +P ++P L E + E E + H A L Q+G W
Sbjct: 347 PWGAPRED---MTPLNLSSRAEPVRDIRCEFCGEFFENRKGLSSH-ARSHLRQMGVTEWS 402
Query: 709 VNGRVLDLVLQLFQAKG--------------CPQLGVPAPPSEAPQPPEAHLPHSAAPAR 754
VNG +D + ++ + K P L PP+ AP P ++ LP S R
Sbjct: 403 VNGSPIDTLREILKKKSKPCLIKKEPPAGDLAPALAEDGPPTVAPGPVQSPLPLSPLAGR 462
Query: 755 -------KAELRRELA 763
A++ REL+
Sbjct: 463 PGKPGAGPAQVPRELS 478
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 33.5 bits (75), Expect = 1.3
Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 19 PCGRPGLPGKEGTAG--GVCGPRRSSSASPQEQDQDRRKDWGHV----ELLEVLQARVRQ 72
P G PG PG +G AG G GP +E ++ + V E L++L RV
Sbjct: 319 PPGPPGTPGSQGLAGERGTVGPSGEPGVKGEEGEKAATAEGEGVQQLREALKILAERV-- 376
Query: 73 LQAESVSEVVVNRVDVARLPECGSG-DGSLQPPRKVQMGAKDATPVPCGRWAKILEKD 129
+ E ++ D PE GSG D +L+ K++ G P G A +L D
Sbjct: 377 ----LILEHMIGIHDPLASPEGGSGQDAALRANLKMKRGGAQ----PDGVLAALLGPD 426
>gi|116292168 KRAB A domain containing 1 [Homo sapiens]
Length = 1030
Score = 33.1 bits (74), Expect = 1.7
Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 724 KGCPQLGVPAPPSEAPQPPEAHLPHSAAPARKAELRRELAHCQK-VAREMHSL---RAEA 779
+G P+L +PP E P PPEA A P A + HC K + +E+HSL AE
Sbjct: 760 QGPPELPSESPPPELP-PPEA-----APPVLPASSLQPPCHCGKPLQQELHSLGAALAEK 813
Query: 780 LYRLSLA 786
L RL+ A
Sbjct: 814 LDRLATA 820
>gi|124378039 SEC16 homolog A [Homo sapiens]
Length = 2357
Score = 32.3 bits (72), Expect = 2.9
Identities = 18/59 (30%), Positives = 25/59 (42%)
Query: 757 ELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNH 815
E+ R H + AR +HS + A R SL+ H + HN+ P PP H
Sbjct: 1342 EVDRRSVHSEHSARSLHSAHSLASRRSSLSSHSHQSQIYRSHNVAAGSYEAPLPPGSFH 1400
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 32.3 bits (72), Expect = 2.9
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 21/96 (21%)
Query: 868 MDDILDSADQPLTGRKWWMGAEEPWQTLACCM--EVANAVRASDPAAYVSHLPVHQDGSC 925
++DI D A++P + W+ ACC EV ++DP L V +G+
Sbjct: 218 LEDICDPAEEPAASPGGPSASRAAWE--ACCHPPEVVPGALSADPRP----LAVRLEGA- 270
Query: 926 NGLQHYAALGRDSVGAA---SVNLEPSDVPQDVYSG 958
G S G A + LEP +P+DV+SG
Sbjct: 271 ---------GASSPGCALRGAGGLEPGPLPEDVFSG 297
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 32.0 bits (71), Expect = 3.7
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 329 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 388
K Q L +L E + + H+++ +LP LPP + T K
Sbjct: 333 KPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRT-----------------K 375
Query: 389 LHLPLKTLQCL-FEKQLHMELASRVCVVSVEKPTLPSKEVKHA-RKTLKTLR--DQWEKA 444
+ LK L+ L F++QL E+ + + + + L SK K + R+TL+ R ++ EK
Sbjct: 376 ATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQ 435
Query: 445 LCRALRETKNRLEREVY 461
+ +E K R + + Y
Sbjct: 436 Q-KIEQERKRRQKHQEY 451
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 32.0 bits (71), Expect = 3.7
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 22/137 (16%)
Query: 329 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 388
K Q L +L E + + H+++ +LP LPP + T K
Sbjct: 333 KPQGLDPVEILQEREYRLQARIAHRIQELENLPGSLPPDLRT-----------------K 375
Query: 389 LHLPLKTLQCL-FEKQLHMELASRVCVVSVEKPTLPSKEVKHA-RKTLKTLR--DQWEKA 444
+ LK L+ L F++QL E+ + + + + L SK K + R+TL+ R ++ EK
Sbjct: 376 ATVELKALRLLNFQRQLRQEVVACMRRDTTLETALNSKAYKRSKRQTLREARMTEKLEKQ 435
Query: 445 LCRALRETKNRLEREVY 461
+ +E K R + + Y
Sbjct: 436 Q-KIEQERKRRQKHQEY 451
>gi|109637771 calpastatin isoform l [Homo sapiens]
Length = 654
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 216 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 275
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 276 EDDETIPSEYRLKPATDKDGKPL 298
>gi|109637769 calpastatin isoform k [Homo sapiens]
Length = 673
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 235 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 294
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 295 EDDETIPSEYRLKPATDKDGKPL 317
>gi|109637767 calpastatin isoform j [Homo sapiens]
Length = 667
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 229 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 288
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 289 EDDETIPSEYRLKPATDKDGKPL 311
>gi|109637765 calpastatin isoform i [Homo sapiens]
Length = 708
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 270 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 329
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 330 EDDETIPSEYRLKPATDKDGKPL 352
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 331 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 390
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 391 EDDETIPSEYRLKPATDKDGKPL 413
>gi|109637761 calpastatin isoform g [Homo sapiens]
Length = 772
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 334 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 393
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 394 EDDETIPSEYRLKPATDKDGKPL 416
>gi|109637759 calpastatin isoform f [Homo sapiens]
Length = 750
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 312 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 371
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 372 EDDETIPSEYRLKPATDKDGKPL 394
>gi|109637757 calpastatin isoform e [Homo sapiens]
Length = 756
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 318 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 377
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 378 EDDETIPSEYRLKPATDKDGKPL 400
>gi|27765085 calpastatin isoform b [Homo sapiens]
Length = 686
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 248 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 307
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 308 EDDETIPSEYRLKPATDKDGKPL 330
>gi|109637753 calpastatin isoform a [Homo sapiens]
Length = 791
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 42 SSASPQEQDQDRRKDWGHVELLEVLQARVRQLQAE------SVSEVVVNRVDVARLPECG 95
S+A PQE+ + KD + LE L A + QAE S+ EV + +L +CG
Sbjct: 353 SAAPPQEKKRKVEKDTMSDQALEALSASLGTRQAEPELDLRSIKEVDEAKAKEEKLEKCG 412
Query: 96 SGDGSLQPPRKVQMGA-KDATPV 117
D ++ +++ KD P+
Sbjct: 413 EDDETIPSEYRLKPATDKDGKPL 435
>gi|122114654 methyltransferase 10 domain containing [Homo sapiens]
Length = 562
Score = 32.0 bits (71), Expect = 3.7
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 19 PCGRPGLPGKEGTAGGVCGPRRSSSASPQEQ-----DQDRRKDWGHVELLEVLQARVRQL 73
PCG P L +EG A V GP S + QE+ + +R ++ G VE+LE Q
Sbjct: 431 PCG-PAL--REGEAAAVEGPCPSQESLSQEENPEPTEDERSEEKGGVEVLESCQGSSNGA 487
Query: 74 QAESVSE 80
Q + SE
Sbjct: 488 QDQEASE 494
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 32.0 bits (71), Expect = 3.7
Identities = 25/57 (43%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 831 RPLGPHG--LD--WLKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRK 883
RPL H LD W KIHL NL + E L+ R V+D +LD Q LTG K
Sbjct: 455 RPLNSHATLLDKYWTKIHLDNLDKRELNEVLQSRYPSLLAVVDHLLDIYIQ-LTGEK 510
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,522,217
Number of Sequences: 37866
Number of extensions: 2381119
Number of successful extensions: 12397
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 12018
Number of HSP's gapped (non-prelim): 421
length of query: 1230
length of database: 18,247,518
effective HSP length: 114
effective length of query: 1116
effective length of database: 13,930,794
effective search space: 15546766104
effective search space used: 15546766104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.