Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: DDX6 Sequence: fasta or formatted (483aa) NCBI GI: 164664518
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 6

Referenced in:

DEAD / H Helicase Family
RNases and RNA Stability

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         21           1
 C cysteine            1.4          7           1
 D aspartate           5.4         26           2
 E glutamate           5.4         26           2
 F phenylalanine       3.1         15           1
 G glycine             6.8         33           4
 H histidine           2.3         11           1
 I isoleucine          8.1         39           2
 K lysine              7.0         34           2
 L leucine            10.6         51           2
 M methionine          3.1         15           1
 N asparagine          5.2         25           2
 P proline             4.3         21           2
 Q glutamine           6.4         31           3
 R arginine            5.2         25           1
 S serine              5.6         27           2
 T threonine           6.8         33           3
 V valine              5.8         28           2
 W tryptophan          0.4          2           1
 Y tyrosine            2.7         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
EIF4A1                0.269   eukaryotic translation initiation factor 4A isoform 1...
EIF4A3                0.268   eukaryotic translation initiation factor 4A, isoform ...
EIF4A2                0.264   eukaryotic translation initiation factor 4A2 
DDX39                 0.235   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
BAT1                  0.233   HLA-B associated transcript 1 
BAT1                  0.233   HLA-B associated transcript 1 
DDX20                 0.213   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX47                 0.203   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX25                 0.198   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
DDX46                 0.192   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX19A                0.191   DDX19-like protein 
DDX19B                0.190   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H...
DDX59                 0.182   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX23                 0.181   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX49                 0.181   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX43                 0.179   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX54                 0.179   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.179   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX19B                0.175   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [...
DDX17                 0.171   DEAD box polypeptide 17 isoform 3 
DDX17                 0.171   DEAD box polypeptide 17 isoform 1 
DDX10                 0.171   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX4                  0.168   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.168   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.168   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX53                 0.166   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
DDX3X                 0.166   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX55                 0.166   DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 
DDX3Y                 0.165   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press