Guide to the Human Genome
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Name: DDX39 Sequence: fasta or formatted (427aa) NCBI GI: 21040371
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 39

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         22           1
 C cysteine            2.1          9           1
 D aspartate           7.0         30           2
 E glutamate           8.4         36           4
 F phenylalanine       5.9         25           2
 G glycine             4.2         18           2
 H histidine           2.3         10           1
 I isoleucine          5.4         23           2
 K lysine              6.6         28           2
 L leucine             9.4         40           2
 M methionine          3.5         15           2
 N asparagine          3.3         14           1
 P proline             4.2         18           2
 Q glutamine           6.1         26           2
 R arginine            6.1         26           2
 S serine              5.4         23           2
 T threonine           3.5         15           1
 V valine              9.1         39           3
 W tryptophan          0.0          0           0
 Y tyrosine            2.3         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
BAT1                  0.915   HLA-B associated transcript 1 
BAT1                  0.915   HLA-B associated transcript 1 
EIF4A2                0.284   eukaryotic translation initiation factor 4A2 
EIF4A1                0.278   eukaryotic translation initiation factor 4A isoform 1...
EIF4A3                0.268   eukaryotic translation initiation factor 4A, isoform ...
DDX6                  0.267   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX20                 0.247   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX47                 0.224   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX19B                0.222   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H...
DDX19A                0.217   DDX19-like protein 
DDX19B                0.207   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [...
DDX27                 0.204   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX49                 0.204   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX23                 0.200   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
DDX19B                0.196   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [...
DDX25                 0.195   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
DDX46                 0.193   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX59                 0.189   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX41                 0.185   DEAD-box protein abstrakt 
DDX3X                 0.177   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX3Y                 0.176   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.176   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX47                 0.175   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX42                 0.168   DEAD box polypeptide 42 protein 
DDX42                 0.168   DEAD box polypeptide 42 protein 
DDX17                 0.167   DEAD box polypeptide 17 isoform 3 
DDX17                 0.167   DEAD box polypeptide 17 isoform 1 
DDX43                 0.167   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX4                  0.167   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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