Guide to the Human Genome
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Name: DDX54 Sequence: fasta or formatted (882aa) NCBI GI: 164419743
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1

Referenced in:

DEAD / H Helicase Family

Other entries for this name:
alt prot [881aa] DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         79           2
 C cysteine            0.6          5           1
 D aspartate           5.3         47           2
 E glutamate           7.1         63           5
 F phenylalanine       3.6         32           2
 G glycine             8.3         73           2
 H histidine           1.6         14           2
 I isoleucine          3.5         31           3
 K lysine              7.8         69           5
 L leucine            10.0         88           2
 M methionine          1.8         16           1
 N asparagine          1.5         13           1
 P proline             5.0         44           1
 Q glutamine           6.5         57           3
 R arginine           10.3         91           3
 S serine              6.2         55           3
 T threonine           4.4         39           2
 V valine              5.4         48           2
 W tryptophan          0.3          3           1
 Y tyrosine            1.7         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1... 
DDX54                 0.996   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX27                 0.125   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX46                 0.123   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX49                 0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX47                 0.108   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX23                 0.106   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
EIF4A3                0.106   eukaryotic translation initiation factor 4A, isoform ...
DDX43                 0.105   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
DDX42                 0.104   DEAD box polypeptide 42 protein 
DDX42                 0.104   DEAD box polypeptide 42 protein 
DDX10                 0.103   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
DDX41                 0.102   DEAD-box protein abstrakt 
DDX53                 0.100   DEAD (Asp-Glu-Ala-Asp) box polypeptide 53 
EIF4A1                0.100   eukaryotic translation initiation factor 4A isoform 1...
DDX6                  0.099   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
EIF4A2                0.098   eukaryotic translation initiation factor 4A2 
DDX4                  0.098   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.098   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.098   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX17                 0.097   DEAD box polypeptide 17 isoform 3 
DDX17                 0.096   DEAD box polypeptide 17 isoform 1 
DDX59                 0.096   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX3X                 0.095   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX5                  0.094   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX47                 0.093   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX18                 0.093   DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 
DDX3Y                 0.091   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.091   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX21                 0.086   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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