Guide to the Human Genome
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Name: DDX25 Sequence: fasta or formatted (483aa) NCBI GI: 164419732
Description:

DEAD (Asp-Glu-Ala-Asp) box polypeptide 25

Referenced in:

DEAD / H Helicase Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         29           2
 C cysteine            1.9          9           1
 D aspartate           5.8         28           2
 E glutamate           7.0         34           2
 F phenylalanine       3.7         18           1
 G glycine             5.6         27           2
 H histidine           2.1         10           1
 I isoleucine          8.3         40           3
 K lysine              5.8         28           2
 L leucine            10.6         51           2
 M methionine          2.9         14           2
 N asparagine          4.8         23           2
 P proline             3.5         17           2
 Q glutamine           5.6         27           1
 R arginine            5.6         27           2
 S serine              6.2         30           2
 T threonine           4.8         23           2
 V valine              6.6         32           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
DDX19A                0.639   DDX19-like protein 
DDX19B                0.636   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H...
DDX19B                0.567   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [...
DDX19B                0.549   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [...
EIF4A3                0.257   eukaryotic translation initiation factor 4A, isoform ...
EIF4A1                0.256   eukaryotic translation initiation factor 4A isoform 1...
EIF4A2                0.247   eukaryotic translation initiation factor 4A2 
DDX6                  0.199   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
BAT1                  0.173   HLA-B associated transcript 1 
BAT1                  0.173   HLA-B associated transcript 1 
DDX39                 0.172   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
DDX20                 0.165   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX27                 0.148   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX46                 0.139   DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 
DDX47                 0.139   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX17                 0.133   DEAD box polypeptide 17 isoform 3 
DDX17                 0.133   DEAD box polypeptide 17 isoform 1 
DDX3Y                 0.133   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.133   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX56                 0.133   DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 
DDX3X                 0.130   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX5                  0.129   DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 
DDX59                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX54                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 2 ...
DDX54                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 isoform 1...
DDX42                 0.126   DEAD box polypeptide 42 protein 
DDX42                 0.126   DEAD box polypeptide 42 protein 
DDX4                  0.125   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.125   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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