Guide to the Human Genome
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Name: DDX19B Sequence: fasta or formatted (448aa) NCBI GI: 62241024
Description:

DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2

Referenced in:

DEAD / H Helicase Family

Other entries for this name:
alt prot [479aa] DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1
alt prot [370aa] DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         36           3
 C cysteine            1.8          8           1
 D aspartate           5.8         26           2
 E glutamate           8.5         38           3
 F phenylalanine       3.1         14           1
 G glycine             4.5         20           1
 H histidine           1.6          7           1
 I isoleucine          5.8         26           1
 K lysine              8.0         36           2
 L leucine             9.8         44           2
 M methionine          2.5         11           2
 N asparagine          5.4         24           1
 P proline             3.3         15           1
 Q glutamine           5.8         26           1
 R arginine            4.9         22           1
 S serine              5.6         25           2
 T threonine           5.1         23           2
 V valine              7.6         34           2
 W tryptophan          0.9          4           1
 Y tyrosine            2.0          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 2 [... 
DDX19B                0.981   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 1 [H...
DDX19A                0.945   DDX19-like protein 
DDX19B                0.780   DEAD (Asp-Glu-Ala-As) box polypeptide 19 isoform 3 [...
DDX25                 0.617   DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 
EIF4A2                0.255   eukaryotic translation initiation factor 4A2 
EIF4A1                0.254   eukaryotic translation initiation factor 4A isoform 1...
EIF4A3                0.236   eukaryotic translation initiation factor 4A, isoform ...
BAT1                  0.192   HLA-B associated transcript 1 
BAT1                  0.192   HLA-B associated transcript 1 
DDX39                 0.189   DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 
DDX20                 0.173   DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 
DDX6                  0.173   DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 
DDX47                 0.144   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
DDX42                 0.137   DEAD box polypeptide 42 protein 
DDX42                 0.137   DEAD box polypeptide 42 protein 
DDX3Y                 0.135   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked ...
DDX3Y                 0.135   DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked [...
DDX3X                 0.133   DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 [Homo...
DDX49                 0.128   DEAD (Asp-Glu-Ala-Asp) box polypeptide 49 
DDX21                 0.126   DEAD (Asp-Glu-Ala-Asp) box polypeptide 21 
DDX27                 0.125   DEAD (Asp-Glu-Ala-Asp) box polypeptide 27 
DDX59                 0.121   DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 
DDX17                 0.118   DEAD box polypeptide 17 isoform 3 
DDX17                 0.118   DEAD box polypeptide 17 isoform 1 
DDX50                 0.116   nucleolar protein GU2 
DDX4                  0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 3 ...
DDX4                  0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 1 [...
DDX4                  0.115   DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 isoform 2 ...
DDX43                 0.113   DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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