BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|163644283 proteasome (prosome, macropain) activator subunit 4 [Homo sapiens] (1843 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|163644283 proteasome (prosome, macropain) activator subunit 4... 3738 0.0 gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 i... 37 0.23 gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 37 0.23 gi|195972866 keratin 10 [Homo sapiens] 36 0.40 gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 33 2.0 gi|21314671 transient receptor potential cation channel, subfami... 33 2.0 gi|117414133 taste receptor, type 2, member 46 [Homo sapiens] 33 2.0 gi|40354195 keratin 18 [Homo sapiens] 33 2.6 gi|4557888 keratin 18 [Homo sapiens] 33 2.6 gi|32455246 beta isoform of regulatory subunit A, protein phosph... 33 2.6 gi|32455244 beta isoform of regulatory subunit A, protein phosph... 33 2.6 gi|45430055 translokin [Homo sapiens] 33 2.6 gi|71274152 hypothetical protein LOC388939 [Homo sapiens] 33 2.6 gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] 33 3.4 gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens] 33 3.4 gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 32 4.4 gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sap... 32 4.4 gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sap... 32 4.4 gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 32 4.4 gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 32 4.4 gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 32 4.4 gi|239757898 PREDICTED: similar to testis expressed sequence 13A... 32 5.7 gi|239752412 PREDICTED: similar to testis expressed sequence 13A... 32 5.7 gi|169216868 PREDICTED: similar to testis expressed sequence 13A... 32 5.7 gi|4557537 developmentally regulated GTP binding protein 2 [Homo... 32 7.5 gi|83367077 mucin 16 [Homo sapiens] 32 7.5 gi|21359945 chromosome condensation protein G [Homo sapiens] 32 7.5 gi|55749932 desmin [Homo sapiens] 32 7.5 gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens] 31 9.8 gi|17530791 zinc finger protein 354B [Homo sapiens] 31 9.8 >gi|163644283 proteasome (prosome, macropain) activator subunit 4 [Homo sapiens] Length = 1843 Score = 3738 bits (9693), Expect = 0.0 Identities = 1843/1843 (100%), Positives = 1843/1843 (100%) Query: 1 MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLG 60 MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLG Sbjct: 1 MEPAERAGVGEPPEPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIKCNLG 60 Query: 61 RAVQLQELWPGGLFWTRKLSTYIRLYGRKFSKEDHVLFIKLLYELVSIPKLEISMMQGFA 120 RAVQLQELWPGGLFWTRKLSTYIRLYGRKFSKEDHVLFIKLLYELVSIPKLEISMMQGFA Sbjct: 61 RAVQLQELWPGGLFWTRKLSTYIRLYGRKFSKEDHVLFIKLLYELVSIPKLEISMMQGFA 120 Query: 121 RLLINLLKKKELLSRADLELPWRPLYDMVERILYSKTEHLGLNWFPNSVENILKTLVKSC 180 RLLINLLKKKELLSRADLELPWRPLYDMVERILYSKTEHLGLNWFPNSVENILKTLVKSC Sbjct: 121 RLLINLLKKKELLSRADLELPWRPLYDMVERILYSKTEHLGLNWFPNSVENILKTLVKSC 180 Query: 181 RPYFPADATAEMLEEWRPLMCPFDVTMQKAITYFEIFLPTSLPPELHHKGFKLWFDELIG 240 RPYFPADATAEMLEEWRPLMCPFDVTMQKAITYFEIFLPTSLPPELHHKGFKLWFDELIG Sbjct: 181 RPYFPADATAEMLEEWRPLMCPFDVTMQKAITYFEIFLPTSLPPELHHKGFKLWFDELIG 240 Query: 241 LWVSVQNLPQWEGQLVNLFARLATDNIGYIDWDPYVPKIFTRILRSLNLPVGSSQVLVPR 300 LWVSVQNLPQWEGQLVNLFARLATDNIGYIDWDPYVPKIFTRILRSLNLPVGSSQVLVPR Sbjct: 241 LWVSVQNLPQWEGQLVNLFARLATDNIGYIDWDPYVPKIFTRILRSLNLPVGSSQVLVPR 300 Query: 301 FLTNAYDIGHAVIWITAMMGGPSKLVQKHLAGLFNSITSFYHPSNNGRWLNKLMKLLQRL 360 FLTNAYDIGHAVIWITAMMGGPSKLVQKHLAGLFNSITSFYHPSNNGRWLNKLMKLLQRL Sbjct: 301 FLTNAYDIGHAVIWITAMMGGPSKLVQKHLAGLFNSITSFYHPSNNGRWLNKLMKLLQRL 360 Query: 361 PNSVVRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQA 420 PNSVVRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQA Sbjct: 361 PNSVVRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQA 420 Query: 421 LQNLALMRPELVIPPVLERTYPALETLTEPHQLTATLSCVIGVARSLVSGGRWFPEGPTH 480 LQNLALMRPELVIPPVLERTYPALETLTEPHQLTATLSCVIGVARSLVSGGRWFPEGPTH Sbjct: 421 LQNLALMRPELVIPPVLERTYPALETLTEPHQLTATLSCVIGVARSLVSGGRWFPEGPTH 480 Query: 481 MLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSVLQERNDLTEVERELCSAT 540 MLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSVLQERNDLTEVERELCSAT Sbjct: 481 MLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSVLQERNDLTEVERELCSAT 540 Query: 541 AEFEDFVLQFMDRCFGLIESSTLEQTREETETEKMTHLESLVELGLSSTFSTILTQCSKE 600 AEFEDFVLQFMDRCFGLIESSTLEQTREETETEKMTHLESLVELGLSSTFSTILTQCSKE Sbjct: 541 AEFEDFVLQFMDRCFGLIESSTLEQTREETETEKMTHLESLVELGLSSTFSTILTQCSKE 600 Query: 601 IFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPHCCSVITQLTMN 660 IFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPHCCSVITQLTMN Sbjct: 601 IFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPHCCSVITQLTMN 660 Query: 661 DDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHLTCKQGYTLSCNL 720 DDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHLTCKQGYTLSCNL Sbjct: 661 DDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHLTCKQGYTLSCNL 720 Query: 721 LHHLLRSTTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHVPSSEEVSFA 780 LHHLLRSTTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHVPSSEEVSFA Sbjct: 721 LHHLLRSTTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHVPSSEEVSFA 780 Query: 781 FYLLDSFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNLV 840 FYLLDSFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNLV Sbjct: 781 FYLLDSFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNLV 840 Query: 841 PSMVSLEETKLYTGLEYDLSRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDL 900 PSMVSLEETKLYTGLEYDLSRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDL Sbjct: 841 PSMVSLEETKLYTGLEYDLSRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDL 900 Query: 901 LQFQGSHKHEFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEY 960 LQFQGSHKHEFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEY Sbjct: 901 LQFQGSHKHEFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEY 960 Query: 961 KKIHQDMIRDLLRLSTSSYSQVRNKAQQTFFAALGAYNFCCRDIIPLVLEFLRPDRQGVT 1020 KKIHQDMIRDLLRLSTSSYSQVRNKAQQTFFAALGAYNFCCRDIIPLVLEFLRPDRQGVT Sbjct: 961 KKIHQDMIRDLLRLSTSSYSQVRNKAQQTFFAALGAYNFCCRDIIPLVLEFLRPDRQGVT 1020 Query: 1021 QQQFKGALYCLLGNHSGVCLANLHDWDCIVQTWPAIVSSGLSQAMSLEKPSIVRLFDDLA 1080 QQQFKGALYCLLGNHSGVCLANLHDWDCIVQTWPAIVSSGLSQAMSLEKPSIVRLFDDLA Sbjct: 1021 QQQFKGALYCLLGNHSGVCLANLHDWDCIVQTWPAIVSSGLSQAMSLEKPSIVRLFDDLA 1080 Query: 1081 EKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGIKRQQEKNADAL 1140 EKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGIKRQQEKNADAL Sbjct: 1081 EKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGIKRQQEKNADAL 1140 Query: 1141 RNYENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPLRAIRFFVENLNHDAIVV 1200 RNYENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPLRAIRFFVENLNHDAIVV Sbjct: 1141 RNYENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPLRAIRFFVENLNHDAIVV 1200 Query: 1201 RKMAISAVAGILKQLKRTHKKLTINPCEISGCPKPTQIIAGDRPDNHWLHYDSKTIPRTK 1260 RKMAISAVAGILKQLKRTHKKLTINPCEISGCPKPTQIIAGDRPDNHWLHYDSKTIPRTK Sbjct: 1201 RKMAISAVAGILKQLKRTHKKLTINPCEISGCPKPTQIIAGDRPDNHWLHYDSKTIPRTK 1260 Query: 1261 KEWESSCFVEKTHWGYYTWPKNMVVYAGVEEQPKLGRSREDMTEAEQIIFDHFSDPKFVE 1320 KEWESSCFVEKTHWGYYTWPKNMVVYAGVEEQPKLGRSREDMTEAEQIIFDHFSDPKFVE Sbjct: 1261 KEWESSCFVEKTHWGYYTWPKNMVVYAGVEEQPKLGRSREDMTEAEQIIFDHFSDPKFVE 1320 Query: 1321 QLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADSHESTQRCVA 1380 QLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADSHESTQRCVA Sbjct: 1321 QLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADSHESTQRCVA 1380 Query: 1381 EIIAGLIRGSKHWTFEKVEKLWELLCPLLRTALSNITVETYNDWGACIATSCESRDPRKL 1440 EIIAGLIRGSKHWTFEKVEKLWELLCPLLRTALSNITVETYNDWGACIATSCESRDPRKL Sbjct: 1381 EIIAGLIRGSKHWTFEKVEKLWELLCPLLRTALSNITVETYNDWGACIATSCESRDPRKL 1440 Query: 1441 HWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKN 1500 HWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKN Sbjct: 1441 HWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKN 1500 Query: 1501 VRERIGSVLTYIFMIDVSLPNTTPTISPHVPEFTARILEKLKPLMDVDEEIQNHVMEENG 1560 VRERIGSVLTYIFMIDVSLPNTTPTISPHVPEFTARILEKLKPLMDVDEEIQNHVMEENG Sbjct: 1501 VRERIGSVLTYIFMIDVSLPNTTPTISPHVPEFTARILEKLKPLMDVDEEIQNHVMEENG 1560 Query: 1561 IGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPVENDNSYDELKR 1620 IGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPVENDNSYDELKR Sbjct: 1561 IGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPVENDNSYDELKR 1620 Query: 1621 DAKLCLSLMSQGLLYPHQVPLVLQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNE 1680 DAKLCLSLMSQGLLYPHQVPLVLQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNE Sbjct: 1621 DAKLCLSLMSQGLLYPHQVPLVLQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNE 1680 Query: 1681 DAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKR 1740 DAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKR Sbjct: 1681 DAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKR 1740 Query: 1741 KRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEM 1800 KRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEM Sbjct: 1741 KRDPGSVGDTIPSAELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEM 1800 Query: 1801 TVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1843 TVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA Sbjct: 1801 TVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1843 >gi|209915591 ribosomal protein S6 kinase, 52kDa, polypeptide 1 isoform b [Homo sapiens] Length = 1054 Score = 36.6 bits (83), Expect = 0.23 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 25/162 (15%) Query: 1047 DCIVQTWPAIVSSGLSQ-----AMSLEKPSIVRLFDDLAEKIHRQYETIGLDFTIPKSCV 1101 D ++ T+P + G S +++++ S+ L D +A + T GL+ + S + Sbjct: 133 DSLIDTFPECSTEGFSSDSDLVSLTVDVDSLAELDDGMASNQNSPIRTFGLNLSSDSSAL 192 Query: 1102 ----------------EIAELLQQSKNPSINQ---ILLSPEKIKEGIKRQQEKNADALRN 1142 E L S P + + + + E IK +K+++E + +A + Sbjct: 193 GAVASDSEQSKTEEERESRSLFPGSLKPKLGKRDYLEKAGELIKLALKKEEEDDYEAASD 252 Query: 1143 -YENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPL 1183 Y VD LL+GV+ + P + E + L+R + + L Sbjct: 253 FYRKGVDLLLEGVQGESSPTRREAVKRRTAEYLMRAESISSL 294 >gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 isoform a [Homo sapiens] Length = 1066 Score = 36.6 bits (83), Expect = 0.23 Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 25/162 (15%) Query: 1047 DCIVQTWPAIVSSGLSQ-----AMSLEKPSIVRLFDDLAEKIHRQYETIGLDFTIPKSCV 1101 D ++ T+P + G S +++++ S+ L D +A + T GL+ + S + Sbjct: 145 DSLIDTFPECSTEGFSSDSDLVSLTVDVDSLAELDDGMASNQNSPIRTFGLNLSSDSSAL 204 Query: 1102 ----------------EIAELLQQSKNPSINQ---ILLSPEKIKEGIKRQQEKNADALRN 1142 E L S P + + + + E IK +K+++E + +A + Sbjct: 205 GAVASDSEQSKTEEERESRSLFPGSLKPKLGKRDYLEKAGELIKLALKKEEEDDYEAASD 264 Query: 1143 -YENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPL 1183 Y VD LL+GV+ + P + E + L+R + + L Sbjct: 265 FYRKGVDLLLEGVQGESSPTRREAVKRRTAEYLMRAESISSL 306 >gi|195972866 keratin 10 [Homo sapiens] Length = 584 Score = 35.8 bits (81), Expect = 0.40 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 2/89 (2%) Query: 900 LLQFQGSHKHEFDSRWKSFNLV--KKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEG 957 LLQ + D R K N V ++S+E ++G ++ + L + + L+ ++ +LT E Sbjct: 221 LLQIDNARLAADDFRLKYENEVALRQSVEADINGLRRVLDELTLTKADLEMQIESLTEEL 280 Query: 958 CEYKKIHQDMIRDLLRLSTSSYSQVRNKA 986 KK H++ ++DL +ST + N A Sbjct: 281 AYLKKNHEEEMKDLRNVSTGDVNVEMNAA 309 >gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] Length = 545 Score = 33.5 bits (75), Expect = 2.0 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 21/100 (21%) Query: 1694 LEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKRKRDPGSVGDTIPS 1753 LE ++E E+ SG SP+Q+ + L + + PK + GS+ + Sbjct: 209 LEGGEVEDPEITGDASSG--------QSSPVQVSQQPLGQAQAPKHPQGGIGSIHHGV-- 258 Query: 1754 AELVKRHAG-VLGLGACV----------LSSPYDVPTWMP 1782 A+ V+ AG VLG+GA + LS P PTW P Sbjct: 259 AQAVQEAAGSVLGVGADIGDQARLPPELLSKPKSCPTWTP 298 >gi|21314671 transient receptor potential cation channel, subfamily M, member 4 [Homo sapiens] Length = 1214 Score = 33.5 bits (75), Expect = 2.0 Identities = 27/119 (22%), Positives = 51/119 (42%) Query: 860 SRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDLLQFQGSHKHEFDSRWKSFN 919 S E+ E T++ K L +SE L + + + + S D +W+SF+ Sbjct: 365 SSEDGSEEFETIVLKALVKACGSSEASAYLDELRLAVAWNRVDIAQSELFRGDIQWRSFH 424 Query: 920 LVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDLLRLSTSS 978 L M+ L+ + + +R L+ + L H L + + +IR+LL ++ S Sbjct: 425 LEASLMDALLNDRPEFVRLLISHGLSLGHFLTPMRLAQLYSAAPSNSLIRNLLDQASHS 483 >gi|117414133 taste receptor, type 2, member 46 [Homo sapiens] Length = 309 Score = 33.5 bits (75), Expect = 2.0 Identities = 39/152 (25%), Positives = 64/152 (42%), Gaps = 33/152 (21%) Query: 1519 LPNTTPTISPHVPEFTARILEKLKPLMDVDEEIQNHVMEENGIGEEDERTQ-GIKLLKTI 1577 L NTT TI ++ FT ++ L + + + ++ M+ +G G +D + IK L+T+ Sbjct: 174 LSNTTVTILANLVPFTLTLISFLLLICSLCKHLKK--MQLHGKGSQDPSMKVHIKALQTV 231 Query: 1578 LKWLMASAGRSFSTAVT----EQLQLLPLFFKIAPVENDNSYDELKRDAKLCLSLMSQGL 1633 +L+ A S ++ E L+ P+F C ++ Sbjct: 232 TSFLLLCAIYFLSIIMSVWSFESLENKPVFM-------------------FCEAI---AF 269 Query: 1634 LYPHQVPLVL----QVLKQTARSSSWHARYTV 1661 YP P +L + LKQT S WH RY V Sbjct: 270 SYPSTHPFILIWGNKKLKQTFLSVLWHVRYWV 301 >gi|40354195 keratin 18 [Homo sapiens] Length = 430 Score = 33.1 bits (74), Expect = 2.6 Identities = 19/69 (27%), Positives = 38/69 (55%) Query: 910 EFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIR 969 +F ++++ +++S+EN +HG ++ I I R+ L+ E+ L E KK H++ ++ Sbjct: 163 DFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVK 222 Query: 970 DLLRLSTSS 978 L SS Sbjct: 223 GLQAQIASS 231 >gi|4557888 keratin 18 [Homo sapiens] Length = 430 Score = 33.1 bits (74), Expect = 2.6 Identities = 19/69 (27%), Positives = 38/69 (55%) Query: 910 EFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIR 969 +F ++++ +++S+EN +HG ++ I I R+ L+ E+ L E KK H++ ++ Sbjct: 163 DFRVKYETELAMRQSVENDIHGLRKVIDDTNITRLQLETEIEALKEELLFMKKNHEEEVK 222 Query: 970 DLLRLSTSS 978 L SS Sbjct: 223 GLQAQIASS 231 >gi|32455246 beta isoform of regulatory subunit A, protein phosphatase 2 isoform a [Homo sapiens] Length = 601 Score = 33.1 bits (74), Expect = 2.6 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 9/109 (8%) Query: 1598 QLLPLFFKIAPVENDNSYDELKRDAKLCLSLMSQGLLYPHQVPLVLQVLKQTARSSSWHA 1657 +++PLF +A E D S L +A C+S+ +Q L LV+ L+Q A SW Sbjct: 216 EIVPLFTSLASDEQD-SVRLLAVEA--CVSI-AQLLSQDDLETLVMPTLRQAAEDKSWRV 271 Query: 1658 RYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAA 1706 RY V F L + + + D+ +LL+D + EVR AA Sbjct: 272 RYMVADR-----FSELQKAMGPKITLNDLIPAFQNLLKDCEAEVRAAAA 315 >gi|32455244 beta isoform of regulatory subunit A, protein phosphatase 2 isoform b [Homo sapiens] Length = 667 Score = 33.1 bits (74), Expect = 2.6 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 9/109 (8%) Query: 1598 QLLPLFFKIAPVENDNSYDELKRDAKLCLSLMSQGLLYPHQVPLVLQVLKQTARSSSWHA 1657 +++PLF +A E D S L +A C+S+ +Q L LV+ L+Q A SW Sbjct: 216 EIVPLFTSLASDEQD-SVRLLAVEA--CVSI-AQLLSQDDLETLVMPTLRQAAEDKSWRV 271 Query: 1658 RYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAA 1706 RY V F L + + + D+ +LL+D + EVR AA Sbjct: 272 RYMVADR-----FSELQKAMGPKITLNDLIPAFQNLLKDCEAEVRAAAA 315 >gi|45430055 translokin [Homo sapiens] Length = 500 Score = 33.1 bits (74), Expect = 2.6 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 6/91 (6%) Query: 923 KSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDLLRLSTSSYSQV 982 +++ + L + IR L ++R+ + ++TL+ E EYKK+ + I++ +S ++ Sbjct: 67 RAIFSALKNLQDKIRRLELERIQAEESVKTLSRETIEYKKVLDEQIQE----RENSKNEE 122 Query: 983 RNKAQQTFFAALGAYNFCCRDIIPLVLEFLR 1013 Q+ L A N C +++ LE++R Sbjct: 123 SKHNQELTSQLLAAENKC--NLLEKQLEYMR 151 >gi|71274152 hypothetical protein LOC388939 [Homo sapiens] Length = 1288 Score = 33.1 bits (74), Expect = 2.6 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 9/112 (8%) Query: 1480 PELLHRLLKYLEPKLTQVYKNVRERIGSVL----TYIFMIDVSLPNTTPTISPHVPEFTA 1535 P LL +LL+Y KL + V GS L +Y+ L N T +V E Sbjct: 264 PNLLQQLLQYTVSKLQVLNGTVASLTGSFLEGSSSYLHSTATHLENKLST-KRNVDERLL 322 Query: 1536 RILEKLKPLMD--VDEEIQNHVM--EENGIGEEDERTQGIKLLKTILKWLMA 1583 R L +L+ L D +Q + E++GIG ++E Q + L W +A Sbjct: 323 RALRQLESLASGCGDPGVQGLPLCSEDSGIGADNESVQSVDKLGKQTSWDLA 374 >gi|148612816 RecQ protein-like 5 isoform 1 [Homo sapiens] Length = 991 Score = 32.7 bits (73), Expect = 3.4 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 13/72 (18%) Query: 5 ERAGVGEPP--------EPGGRPEPGPRGFVPQKEIVYNKLLPYAERLDAESDLQLAQIK 56 ER G EPP E G P PGPRG VP Y P + + LA+ Sbjct: 686 ERGGEHEPPSRPCGLLDEDGSEPLPGPRGEVPGGSAHYGGPSPEKKAKSSSGGSSLAK-- 743 Query: 57 CNLGRAVQLQEL 68 GRA + Q+L Sbjct: 744 ---GRASKKQQL 752 >gi|178056552 non-SMC condensin I complex, subunit D2 [Homo sapiens] Length = 1401 Score = 32.7 bits (73), Expect = 3.4 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 31/188 (16%) Query: 1429 ATSCESRDPRKLHWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLK 1488 AT C+S+ L LF +L +SPL + L V G LA R P L+ Sbjct: 1049 ATFCDSQ----LRLLFTMLEKSPLP------IVRSNLMVATGDLAI---RFPNLVDPWTP 1095 Query: 1489 YLEPKLTQVYKNVRERIGSVLTYIFMID------------VSLPNTTPTISPHVPEFTAR 1536 +L +L + VR+ G V+T++ + D V L + P I+ F Sbjct: 1096 HLYARLRDPAQQVRKTAGLVMTHLILKDMVKVKGQVSEMAVLLIDPEPQIAALAKNFFNE 1155 Query: 1537 ILEKLKPLMDVDEEIQNHVME-ENGIGEEDERTQGIKLLKTILK-----WLMASAGRSFS 1590 + K + ++ +I + + + E G+ EE T +LL I K L+ + F Sbjct: 1156 LSHKGNAIYNLLPDIISRLSDPELGVEEEPFHTIMKQLLSYITKDKQTESLVEKLCQRFR 1215 Query: 1591 TAVTEQLQ 1598 T+ TE+ Q Sbjct: 1216 TSRTERQQ 1223 >gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] Length = 1466 Score = 32.3 bits (72), Expect = 4.4 Identities = 13/23 (56%), Positives = 15/23 (65%) Query: 3 PAERAGVGEPPEPGGRPEPGPRG 25 P R G GEP + G + EPGPRG Sbjct: 425 PGLRGGAGEPGKNGAKGEPGPRG 447 >gi|239745259 PREDICTED: hypothetical protein isoform 2 [Homo sapiens] Length = 432 Score = 32.3 bits (72), Expect = 4.4 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 1081 EKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGIKRQQEKNADAL 1140 E++H Q E L + C + L +Q K P ++L EK+ E +RQ+E+ + L Sbjct: 213 ERLHEQEER--LCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQ--ERL 268 Query: 1141 RNYENLVDTLLDGVEQRNLPWKFEHI 1166 E L+D + + +EQ L + E + Sbjct: 269 LERERLLDEVEELLEQERLRQQDERL 294 >gi|169208122 PREDICTED: hypothetical protein isoform 1 [Homo sapiens] Length = 479 Score = 32.3 bits (72), Expect = 4.4 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 1081 EKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGIKRQQEKNADAL 1140 E++H Q E L + C + L +Q K P ++L EK+ E +RQ+E+ + L Sbjct: 248 ERLHEQEER--LCEQEERLCEQEERLCEQEKLPGQERLLEEVEKLLEQERRQEEQ--ERL 303 Query: 1141 RNYENLVDTLLDGVEQRNLPWKFEHI 1166 E L+D + + +EQ L + E + Sbjct: 304 LERERLLDEVEELLEQERLRQQDERL 329 >gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo sapiens] Length = 828 Score = 32.3 bits (72), Expect = 4.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Query: 2 EPAERAGVGEPPEPGGRPEPGPRG 25 EP + GEP +PG EPGPRG Sbjct: 547 EPGRKGEKGEPADPGPPGEPGPRG 570 >gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo sapiens] Length = 918 Score = 32.3 bits (72), Expect = 4.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Query: 2 EPAERAGVGEPPEPGGRPEPGPRG 25 EP + GEP +PG EPGPRG Sbjct: 547 EPGRKGEKGEPADPGPPGEPGPRG 570 >gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo sapiens] Length = 1019 Score = 32.3 bits (72), Expect = 4.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Query: 2 EPAERAGVGEPPEPGGRPEPGPRG 25 EP + GEP +PG EPGPRG Sbjct: 547 EPGRKGEKGEPADPGPPGEPGPRG 570 >gi|239757898 PREDICTED: similar to testis expressed sequence 13A [Homo sapiens] Length = 652 Score = 32.0 bits (71), Expect = 5.7 Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 365 VRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQALQNL 424 +RR E K+P W P+ DS ++ + Q I+ +S+ GS E AQ + L Sbjct: 430 IRRCKPEGPKRPQWTVPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQEGSPERAQGMATL 489 Query: 425 ALMR 428 R Sbjct: 490 VFSR 493 >gi|239752412 PREDICTED: similar to testis expressed sequence 13A [Homo sapiens] Length = 652 Score = 32.0 bits (71), Expect = 5.7 Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 365 VRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQALQNL 424 +RR E K+P W P+ DS ++ + Q I+ +S+ GS E AQ + L Sbjct: 430 IRRCKPEGPKRPQWTVPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQEGSPERAQGMATL 489 Query: 425 ALMR 428 R Sbjct: 490 VFSR 493 >gi|169216868 PREDICTED: similar to testis expressed sequence 13A [Homo sapiens] Length = 714 Score = 32.0 bits (71), Expect = 5.7 Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 365 VRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQALQNL 424 +RR E K+P W P+ DS ++ + Q I+ +S+ GS E AQ + L Sbjct: 430 IRRCKPEGPKRPQWTVPLGDSRSHIKEEGPEGPQRIVLQGDNRSYSQEGSPERAQGMATL 489 Query: 425 ALMR 428 R Sbjct: 490 VFSR 493 >gi|4557537 developmentally regulated GTP binding protein 2 [Homo sapiens] Length = 364 Score = 31.6 bits (70), Expect = 7.5 Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 35/182 (19%) Query: 539 ATAEFEDFVLQFMDRCFGLIESSTLEQTREETETEKMTHLESLVEL-----GLSSTFSTI 593 A A D ++ +D G ++ S LE+ E H ++ G+S + Sbjct: 135 AVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFKPKKGGGISFNSTVT 194 Query: 594 LTQCSKEIFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPH---- 649 LTQCS+++ + L + F+ +F C P+E + + V + Sbjct: 195 LTQCSEKLVQLILHEYKIFNAEVLFRE---------------DCSPDEFIDVIVGNRVYM 239 Query: 650 -CCSVITQLTMNDDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHL 708 C V ++ D ++ EE+D+ + + + G KL L + L+++L L L Sbjct: 240 PCLYVYNKI----DQISMEEVDR----LARKPNSVVISCGMKLNL--DYLLEMLWEYLAL 289 Query: 709 TC 710 TC Sbjct: 290 TC 291 >gi|83367077 mucin 16 [Homo sapiens] Length = 14507 Score = 31.6 bits (70), Expect = 7.5 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 13/128 (10%) Query: 727 STTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHV-PSSEEVSFAFYLLD 785 STTL + +V GF P SE ++ PGD + W P EE S F Sbjct: 5585 STTLFQGGTHSTVSQGF--PHSEITTLRS-RTPGD-----VSWMTTPPVEETSSGF---- 5632 Query: 786 SFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNLVPSMVS 845 S + P + E L ++ + L+ + N+L EPVT+ P++ S Sbjct: 5633 SLMSPSMTSPSPVSSTSPESIPSSPLPVTALLTSVLVTTTNVLGTTSPEPVTSSPPNLSS 5692 Query: 846 LEETKLYT 853 + +L T Sbjct: 5693 PTQERLTT 5700 >gi|21359945 chromosome condensation protein G [Homo sapiens] Length = 1015 Score = 31.6 bits (70), Expect = 7.5 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 1446 LLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKNVRERI 1505 +LL+ L+ + A + ++LQG L E + ELLHRL ++V +V + Sbjct: 248 MLLQQGLNDRSDAVKQAMQKHLLQGWLRFSEGNILELLHRL---DVENSSEVAVSVLNAL 304 Query: 1506 GSVLTYIFMIDVSLPN------TTPTISPHVPEFTARILEKLKPLMDVDEEIQNHVMEE 1558 S+ ++ + N T++P + + + E LK D EE ++ E Sbjct: 305 FSITPLSELVGLCKNNDGRKLIPVETLTPEIALYWCALCEYLKSKGDEGEEFLEQILPE 363 >gi|55749932 desmin [Homo sapiens] Length = 470 Score = 31.6 bits (70), Expect = 7.5 Identities = 15/51 (29%), Positives = 28/51 (54%) Query: 921 VKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDL 971 +K+ EN L + + A + R+ L+ + +L E KK+H++ IR+L Sbjct: 200 LKEEAENNLAAFRADVDAATLARIDLERRIESLNEEIAFLKKVHEEEIREL 250 >gi|122937434 Rho-guanine nucleotide exchange factor [Homo sapiens] Length = 1651 Score = 31.2 bits (69), Expect = 9.8 Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 5/125 (4%) Query: 871 VIRKLLNHILDNSEDDTKSLFLIIKIIGDLLQFQGSHKHEFDSRWKSFNLVKKSMENRLH 930 ++ ++L + + +E+ K L + +I D++ +E++ K ++ K +EN+ + Sbjct: 1009 LVERILQYTKERTEEH-KDLRKALCLIKDMIATVDLKVNEYEKNQKWLEILNK-IENKTY 1066 Query: 931 GKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDLLR-LSTSSYSQVRNKAQQT 989 K ++ + + L E RTL +G Y K +D+L L T ++ K Q+ Sbjct: 1067 TKLKN--GHVFRKQALMSEERTLLYDGLVYWKTATGRFKDILALLLTDVLLFLQEKDQKY 1124 Query: 990 FFAAL 994 FAA+ Sbjct: 1125 IFAAV 1129 >gi|17530791 zinc finger protein 354B [Homo sapiens] Length = 612 Score = 31.2 bits (69), Expect = 9.8 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 13/97 (13%) Query: 1070 PSIVRLFDDLAEKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSINQILLSPEKIKEGI 1129 PS L+ D+ + +R ++GL FT PK + LLQQ ++P EK G+ Sbjct: 33 PSQRNLYRDVMLENYRNLVSLGLSFTKPK----VISLLQQGEDP------WEVEKDSSGV 82 Query: 1130 KRQQEKNADALRNYENLVDTLLDGVE---QRNLPWKF 1163 K+ + D+ + + +R+ PW F Sbjct: 83 SSLGCKSTPKMTKSTQTQDSFQEQIRKRLKRDEPWNF 119 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.322 0.138 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,068,295 Number of Sequences: 37866 Number of extensions: 3282409 Number of successful extensions: 10143 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 10038 Number of HSP's gapped (non-prelim): 128 length of query: 1843 length of database: 18,247,518 effective HSP length: 117 effective length of query: 1726 effective length of database: 13,817,196 effective search space: 23848480296 effective search space used: 23848480296 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.