Guide to the Human Genome
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Name: PLXNA4 Sequence: fasta or formatted (492aa) NCBI GI: 157738647
Description:

plexin A4 isoform 3

Referenced in:

Semaphorins

Other entries for this name:
alt prot [522aa] plexin A4 isoform 2
alt prot [1894aa] plexin A4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         22           2
 C cysteine            2.6         13           1
 D aspartate           5.7         28           3
 E glutamate           5.3         26           1
 F phenylalanine       4.7         23           1
 G glycine             6.7         33           1
 H histidine           2.0         10           1
 I isoleucine          4.7         23           2
 K lysine              6.7         33           2
 L leucine            11.4         56           2
 M methionine          2.6         13           1
 N asparagine          3.9         19           2
 P proline             5.1         25           2
 Q glutamine           2.4         12           1
 R arginine            4.5         22           1
 S serine              8.5         42           2
 T threonine           6.7         33           3
 V valine              7.1         35           2
 W tryptophan          0.6          3           1
 Y tyrosine            4.3         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin A4 isoform 3 
PLXNA4                0.930   plexin A4 isoform 2 
PLXNA4                0.928   plexin A4 isoform 1 
PLXNA2                0.509   plexin A2 
PLXNA1                0.459   plexin A1 
PLXNA3                0.450   plexin A3 
PLXNB2                0.135   plexin B2 
MET                   0.110   met proto-oncogene isoform b precursor 
MET                   0.110   met proto-oncogene isoform a precursor 
PLXNB1                0.097   plexin B1 
PLXNB1                0.097   plexin B1 
PLXNB3                0.090   plexin B3 isoform 2 
PLXNB3                0.090   plexin B3 isoform 1 
PLXND1                0.065   plexin D1 
MST1R                 0.052   macrophage stimulating 1 receptor precursor 
SEMA4B                0.026   semaphorin 4B precursor 
SEMA4B                0.026   semaphorin 4B precursor 
SEMA6B                0.011   semaphorin 6B precursor 
SEMA4A                0.009   semaphorin B 
SEMA3A                0.008   semaphorin 3A precursor 
SEMA3G                0.007   semaphorin sem2 
GOLGB1                0.005   golgi autoantigen, golgin subfamily b, macrogolgin ...
C22orf28              0.004   hypothetical protein LOC51493 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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