Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SEMA4C Sequence: fasta or formatted (833aa) NCBI GI: 157388902
Description:

semaphorin 4C

Referenced in:

Semaphorins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         65           2
 C cysteine            2.5         21           1
 D aspartate           3.7         31           3
 E glutamate           6.4         53           2
 F phenylalanine       3.8         32           3
 G glycine             8.5         71           3
 H histidine           2.9         24           2
 I isoleucine          2.2         18           2
 K lysine              4.0         33           2
 L leucine            12.0        100           4
 M methionine          1.6         13           1
 N asparagine          3.2         27           2
 P proline             7.1         59           3
 Q glutamine           4.2         35           2
 R arginine            5.9         49           3
 S serine              5.9         49           2
 T threonine           5.3         44           2
 V valine              7.2         60           2
 W tryptophan          2.4         20           2
 Y tyrosine            3.5         29           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   semaphorin 4C 
SEMA4G                0.295   semaphorin 4G 
SEMA4D                0.269   semaphorin 4D isoform 1 
SEMA4B                0.267   semaphorin 4B precursor 
SEMA4B                0.267   semaphorin 4B precursor 
SEMA4D                0.260   semaphorin 4D isoform 2 
SEMA4F                0.224   semaphorin W 
SEMA4A                0.220   semaphorin B 
SEMA3A                0.193   semaphorin 3A precursor 
SEMA3B                0.189   semaphorin 3B isoform 1 precursor 
SEMA3B                0.187   semaphorin 3B isoform 2 precursor 
SEMA3D                0.183   semaphorin 3D 
SEMA3G                0.172   semaphorin sem2 
SEMA3E                0.170   semaphorin 3E 
SEMA3F                0.169   semaphorin 3F 
SEMA3C                0.161   semaphorin 3C 
SEMA5A                0.146   semaphorin 5A 
SEMA5B                0.144   semaphorin 5B isoform 1 
SEMA6D                0.142   semaphorin 6D isoform 1 precursor 
SEMA6D                0.142   semaphorin 6D isoform 5 precursor 
SEMA6D                0.142   semaphorin 6D isoform 4 precursor 
SEMA6D                0.142   semaphorin 6D isoform 3 precursor 
SEMA6D                0.142   semaphorin 6D isoform 2 precursor 
SEMA6C                0.138   semaphorin Y 
SEMA6A                0.134   sema domain, transmembrane domain (TM), and cytoplas...
SEMA6D                0.125   semaphorin 6D isoform 6 precursor 
SEMA6B                0.124   semaphorin 6B precursor 
SEMA7A                0.083   semaphorin 7A isoform 2 preproprotein 
SEMA7A                0.082   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.075   semaphorin 7A isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press