Guide to the Human Genome
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Name: LOC100129791 Sequence: fasta or formatted (338aa) NCBI GI: 239754018
Description:

PREDICTED: hypothetical protein LOC100129791

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Other entries for this name:
alt prot [338aa] PREDICTED: hypothetical protein LOC100129791
alt prot [338aa] PREDICTED: hypothetical protein LOC100129791
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         18           2
 C cysteine            1.8          6           1
 D aspartate           3.3         11           1
 E glutamate          13.0         44           2
 F phenylalanine       3.3         11           1
 G glycine             3.0         10           1
 H histidine           0.6          2           1
 I isoleucine          5.9         20           2
 K lysine              9.5         32           2
 L leucine             8.3         28           2
 M methionine          3.6         12           1
 N asparagine          5.9         20           2
 P proline             3.8         13           3
 Q glutamine           6.2         21           1
 R arginine           10.4         35           2
 S serine              6.5         22           3
 T threonine           4.7         16           2
 V valine              2.4          8           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.986   PREDICTED: hypothetical protein LOC100129791 
LOC100129791          0.986   PREDICTED: hypothetical protein LOC100129791 
L1TD1                 0.215   LINE-1 type transposase domain containing 1 
LOC100291103          0.169   PREDICTED: hypothetical protein XP_002348046 
LOC100288854          0.169   PREDICTED: hypothetical protein XP_002344210 
LOC100291649          0.169   PREDICTED: similar to lactation elevated 1 (predict...
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
UACA                  0.037   uveal autoantigen with coiled-coil domains and ankyr...
KIAA0947              0.036   hypothetical protein LOC23379 
RAD50                 0.036   RAD50 homolog isoform 2 
RAD50                 0.036   RAD50 homolog isoform 1 
UNC13C                0.034   unc-13 homolog C 
SMC6                  0.034   SMC6 protein 
SMC6                  0.034   SMC6 protein 
FYCO1                 0.031   FYVE and coiled-coil domain containing 1 
GOLGA4                0.029   golgi autoantigen, golgin subfamily a, 4 
CEP135                0.029   centrosome protein 4 
CLIP1                 0.029   restin isoform b 
CLIP1                 0.029   restin isoform a 
SYNE1                 0.029   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.029   spectrin repeat containing, nuclear envelope 1 isof...
C10orf118             0.029   CTCL tumor antigen L14-2 
ANKRD20A5             0.029   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.029   PREDICTED: ankyrin repeat domain 20 family, member ...
MYO6                  0.029   myosin VI 
GOLGA1                0.029   golgin 97 
LOC100133220          0.028   PREDICTED: hypothetical protein 
TCHH                  0.028   trichohyalin 
OPTN                  0.028   optineurin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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