Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: GALNT7 Sequence: fasta or formatted (657aa) NCBI GI: 157502212
Description:

polypeptide N-acetylgalactosaminyltransferase 7

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         26           1
 C cysteine            1.8         12           1
 D aspartate           5.3         35           2
 E glutamate           7.5         49           2
 F phenylalanine       4.4         29           3
 G glycine             8.1         53           3
 H histidine           2.7         18           2
 I isoleucine          5.9         39           2
 K lysine              6.5         43           2
 L leucine             8.4         55           2
 M methionine          2.3         15           1
 N asparagine          4.7         31           2
 P proline             6.4         42           3
 Q glutamine           3.7         24           1
 R arginine            5.8         38           2
 S serine              5.8         38           2
 T threonine           3.5         23           2
 V valine              6.7         44           2
 W tryptophan          2.7         18           2
 Y tyrosine            3.8         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polypeptide N-acetylgalactosaminyltransferase 7 [Ho... 
GALNT10               0.275   GalNAc transferase 10 isoform a 
GALNTL6               0.272   N-acetylgalactosaminyltransferase-like 6 
GALNT1                0.262   polypeptide N-acetylgalactosaminyltransferase 1 [Hom...
GALNT13               0.256   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT11               0.229   N-acetylgalactosaminyltransferase 11 
GALNT2                0.217   polypeptide N-acetylgalactosaminyltransferase 2 [Homo...
GALNT6                0.215   polypeptide N-acetylgalactosaminyltransferase 6 [Ho...
GALNT4                0.211   polypeptide N-acetylgalactosaminyltransferase 4 [Hom...
GALNT14               0.207   N-acetylgalactosaminyltransferase 14 
GALNT12               0.203   N-acetylgalactosaminyltransferase 12 
GALNTL1               0.199   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT5                0.196   N-acetylgalactosaminyltransferase 5 
GALNT3                0.195   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
GALNTL5               0.195   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT9                0.184   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
WBSCR17               0.178   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
GALNTL2               0.176   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT8                0.159   polypeptide N-acetylgalactosaminyltransferase 8 [Homo...
GALNTL4               0.153   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT10               0.092   GalNAc transferase 10 isoform b 
GALNT9                0.035   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
ZC3H12C               0.006   zinc finger CCCH-type containing 12C 
C1QL1                 0.006   complement component 1, q subcomponent-like 1 
C1QL3                 0.006   complement component 1, q subcomponent-like 3 
MAGI1                 0.006   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.006   membrane associated guanylate kinase, WW and PDZ dom...
MAGI1                 0.006   membrane associated guanylate kinase, WW and PDZ dom...
COL4A5                0.005   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.005   type IV collagen alpha 5 isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press