Guide to the Human Genome
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Name: GALNTL2 Sequence: fasta or formatted (639aa) NCBI GI: 190014583
Description:

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         41           1
 C cysteine            2.8         18           1
 D aspartate           5.5         35           2
 E glutamate           7.4         47           4
 F phenylalanine       3.3         21           1
 G glycine             5.8         37           2
 H histidine           4.1         26           2
 I isoleucine          3.6         23           2
 K lysine              3.6         23           1
 L leucine            12.5         80           5
 M methionine          2.0         13           2
 N asparagine          2.0         13           2
 P proline             6.3         40           2
 Q glutamine           6.7         43           3
 R arginine            8.1         52           2
 S serine              6.9         44           1
 T threonine           3.0         19           1
 V valine              5.8         37           2
 W tryptophan          1.9         12           1
 Y tyrosine            2.3         15           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac... 
GALNT4                0.283   polypeptide N-acetylgalactosaminyltransferase 4 [Hom...
GALNT12               0.282   N-acetylgalactosaminyltransferase 12 
GALNT6                0.259   polypeptide N-acetylgalactosaminyltransferase 6 [Ho...
GALNT3                0.255   polypeptide N-acetylgalactosaminyltransferase 3 [Ho...
GALNT10               0.245   GalNAc transferase 10 isoform a 
GALNT11               0.231   N-acetylgalactosaminyltransferase 11 
GALNTL6               0.230   N-acetylgalactosaminyltransferase-like 6 
GALNT1                0.228   polypeptide N-acetylgalactosaminyltransferase 1 [Hom...
GALNT5                0.227   N-acetylgalactosaminyltransferase 5 
GALNT13               0.221   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT2                0.213   polypeptide N-acetylgalactosaminyltransferase 2 [Homo...
GALNTL5               0.207   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT14               0.200   N-acetylgalactosaminyltransferase 14 
GALNTL1               0.194   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
GALNT7                0.184   polypeptide N-acetylgalactosaminyltransferase 7 [Ho...
GALNTL4               0.179   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
GALNT9                0.179   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ac...
WBSCR17               0.173   UDP-GalNAc:polypeptide N-acetylgalactosaminyltransfe...
GALNT8                0.173   polypeptide N-acetylgalactosaminyltransferase 8 [Homo...
GALNT10               0.077   GalNAc transferase 10 isoform b 
GALNT9                0.049   UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...
DPM1                  0.008   dolichyl-phosphate mannosyltransferase 1 
STK10                 0.008   serine/threonine kinase 10 
ZNF652                0.006   zinc finger protein 652 
ZNF652                0.006   zinc finger protein 652 
ANP32E                0.005   acidic (leucine-rich) nuclear phosphoprotein 32 fam...
AKD1                  0.005   adenylate kinase domain containing 1 isoform 1 [Hom...
AKD1                  0.005   adenylate kinase domain containing 1 isoform 2 [Homo...
KIF16B                0.005   kinesin-like motor protein C20orf23 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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