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Search of human proteins with 157412282
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157412282 ash2-like isoform b [Homo sapiens]
(534 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157412282 ash2-like isoform b [Homo sapiens] 1129 0.0
gi|157412280 ash2-like isoform a [Homo sapiens] 1129 0.0
gi|37588869 ring finger protein 123 [Homo sapiens] 52 1e-06
gi|126032338 ryanodine receptor 3 [Homo sapiens] 51 2e-06
gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens] 49 9e-06
gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo ... 48 3e-05
gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo ... 48 3e-05
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H... 48 3e-05
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 1e-04
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 45 1e-04
gi|39812378 RAN binding protein 9 [Homo sapiens] 45 2e-04
gi|40538736 RAN binding protein 10 [Homo sapiens] 45 2e-04
gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b ... 42 0.001
gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a ... 42 0.001
gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens] 40 0.007
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 37 0.035
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 37 0.035
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 37 0.059
gi|24308203 CSRP2 binding protein isoform a [Homo sapiens] 36 0.077
gi|4505777 PHD finger protein 1 isoform a [Homo sapiens] 34 0.29
gi|157168349 F-box and leucine-rich repeat protein 19 [Homo sapi... 33 0.65
gi|186928829 dermokine isoform 4 precursor [Homo sapiens] 33 0.85
gi|186928827 dermokine isoform 5 precursor [Homo sapiens] 33 0.85
gi|186928825 dermokine isoform 3 precursor [Homo sapiens] 33 0.85
gi|33504489 dermokine isoform 2 precursor [Homo sapiens] 33 0.85
gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo s... 33 0.85
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 33 0.85
gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens] 32 1.1
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 32 1.5
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 32 1.5
>gi|157412282 ash2-like isoform b [Homo sapiens]
Length = 534
Score = 1129 bits (2919), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
Query: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
Query: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
Query: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH
Sbjct: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
Query: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
Query: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
Query: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
Query: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV
Sbjct: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
Query: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 534
SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP
Sbjct: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 534
>gi|157412280 ash2-like isoform a [Homo sapiens]
Length = 628
Score = 1129 bits (2919), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60
MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG
Sbjct: 95 MDTQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 154
Query: 61 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 120
NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP
Sbjct: 155 NTYFLRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRP 214
Query: 121 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 180
GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS
Sbjct: 215 GKMTWPNNIVKTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQS 274
Query: 181 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 240
SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH
Sbjct: 275 SAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEH 334
Query: 241 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 300
PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI
Sbjct: 335 PFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKI 394
Query: 301 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 360
SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD
Sbjct: 395 SDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYD 454
Query: 361 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 420
KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF
Sbjct: 455 KFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKF 514
Query: 421 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 480
KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV
Sbjct: 515 KSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGVYFPAISLYKSCTV 574
Query: 481 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 534
SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP
Sbjct: 575 SINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETEVDGRRSPPWEP 628
>gi|37588869 ring finger protein 123 [Homo sapiens]
Length = 1314
Score = 52.0 bits (123), Expect = 1e-06
Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 56/211 (26%)
Query: 298 LKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWS--QPLGNLQA 355
L + DD L V+G + +R++ V KG W +E+ + ++GW N +
Sbjct: 106 LLVDDDLLGVIGHSNFGTIRSTTCVYKGKWLYEVLISS---QGLMQIGWCTISCRFNQEE 162
Query: 356 PLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDK 415
+G SY++ + K++ + +Y + GD++ I+L + T
Sbjct: 163 GVGDTHNSYAYDGNRVRKWNVTT-TNYGKAWAAGDIVSCLIDLDDGT------------- 208
Query: 416 ALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAYKDIFEGV---YFPAI 472
+ F NGV+ G A++++ G+ YFPAI
Sbjct: 209 -------------------------------LSFCLNGVSLGTAFENLSRGLGMAYFPAI 237
Query: 473 SLYKSCTVSINFGP-CFKYPPKDLTYRPMSD 502
SL +V+ NFG +YP YRP+ D
Sbjct: 238 SLSFKESVAFNFGSRPLRYPVAG--YRPLQD 266
>gi|126032338 ryanodine receptor 3 [Homo sapiens]
Length = 4870
Score = 51.2 bits (121), Expect = 2e-06
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 299 KISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLG 358
K+S D++ + V S+ VR G WYFE E+ R+GW++P LG
Sbjct: 1065 KVSIDKIR------FFRVERSYAVRSGKWYFEF---EVVTGGDMRVGWARPGCRPDVELG 1115
Query: 359 YDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPE 400
D ++ + +G ++HQ G ++ + GDV+G INL +
Sbjct: 1116 ADDQAFVFEGNRGQRWHQGSG-YFGRTWQPGDVVGCMINLDD 1156
Score = 29.3 bits (64), Expect = 9.4
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 10/48 (20%)
Query: 321 GVRKGA-----WYFEITVDEMPP-----DTAARLGWSQPLGNLQAPLG 358
GV +G+ WYFE+ +D++ P T R+GW+ G P G
Sbjct: 649 GVAEGSAQYKKWYFELIIDQVDPFLTAEPTHLRVGWASSSGYAPYPGG 696
>gi|112799847 cardiac muscle ryanodine receptor [Homo sapiens]
Length = 4967
Score = 49.3 bits (116), Expect = 9e-06
Identities = 27/87 (31%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 319 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 375
++ V+ G WYFE +T +M R+GWS+P LG D+ ++++ K ++H
Sbjct: 1093 TYAVKAGRWYFEFETVTAGDM------RVGWSRPGCQPDQELGSDERAFAFDGFKAQRWH 1146
Query: 376 QSIGKHYSSGYGQGDVLGFYINLPEDT 402
Q +HY + GDV+G +++ E T
Sbjct: 1147 QG-NEHYGRSWQAGDVVGCMVDMNEHT 1172
>gi|113204617 skeletal muscle ryanodine receptor isoform 2 [Homo
sapiens]
Length = 5033
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 319 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 375
S+ V+ G WYFE +T EM R+GW++P LG D+ +Y + +G ++H
Sbjct: 1079 SYTVQSGRWYFEFEAVTTGEM------RVGWARPELRPDVELGADELAYVFNGHRGQRWH 1132
Query: 376 QSIGKHYSSGYGQGDVLGFYINLPEDT 402
+ + + GDV+G I+L E+T
Sbjct: 1133 LG-SEPFGRPWQPGDVVGCMIDLTENT 1158
Score = 30.4 bits (67), Expect = 4.2
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 317 RASHGVRKGAWYFEITVDEMPP-----DTAARLGWSQPLGNLQAP----------LGYDK 361
RA + WYFE+ VDE+ P T R+GW+ G P +G D
Sbjct: 651 RAEGTTQYSKWYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDL 710
Query: 362 FSYSW 366
+SY +
Sbjct: 711 YSYGF 715
>gi|113204615 skeletal muscle ryanodine receptor isoform 1 [Homo
sapiens]
Length = 5038
Score = 47.8 bits (112), Expect = 3e-05
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 319 SHGVRKGAWYFE---ITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFH 375
S+ V+ G WYFE +T EM R+GW++P LG D+ +Y + +G ++H
Sbjct: 1079 SYTVQSGRWYFEFEAVTTGEM------RVGWARPELRPDVELGADELAYVFNGHRGQRWH 1132
Query: 376 QSIGKHYSSGYGQGDVLGFYINLPEDT 402
+ + + GDV+G I+L E+T
Sbjct: 1133 LG-SEPFGRPWQPGDVVGCMIDLTENT 1158
Score = 30.4 bits (67), Expect = 4.2
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 317 RASHGVRKGAWYFEITVDEMPP-----DTAARLGWSQPLGNLQAP----------LGYDK 361
RA + WYFE+ VDE+ P T R+GW+ G P +G D
Sbjct: 651 RAEGTTQYSKWYFEVMVDEVTPFLTAQATHLRVGWALTEGYTPYPGAGEGWGGNGVGDDL 710
Query: 362 FSYSW 366
+SY +
Sbjct: 711 YSYGF 715
>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
sapiens]
Length = 747
Score = 47.8 bits (112), Expect = 3e-05
Identities = 71/319 (22%), Positives = 116/319 (36%), Gaps = 95/319 (29%)
Query: 195 AGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLEHPFNKDGYRYILAEP 254
AGS G+ RG KR++ + G + + ++ P P E + L
Sbjct: 191 AGSDGERRGVKRQRDEKDEHGRAYYEFREEAYHSRSKSP--LPPEEEAKDEEEDQTLVNL 248
Query: 255 DPHAPDPE-KLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGY 313
D + D ++ D + G+P+ ++ P L +
Sbjct: 249 DTYTSDLHFQVSKDRYGGQPL----------------FSEKFPTL--------------W 278
Query: 314 SMVRASHGVRKGAWYFEITVDEMPPD-------TAARLGWSQPLGNLQAPLGYDKFSYSW 366
S R+++GV KG FE V + P + R+GWS Q LG D+FSY +
Sbjct: 279 SGARSTYGVTKGKVCFEAKVTQNLPMKEGCTEVSLLRVGWSVDFSRPQ--LGEDEFSYGF 336
Query: 367 RSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYF 426
+ G K + + +G+ DV+G + N
Sbjct: 337 DGR-GLKAENGQFEEFGQTFGENDVIGCFANF---------------------------- 367
Query: 427 EEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY---KD-IFEGVYFPAISLYKSCTVSI 482
+T E+ F KNG + GVA+ KD + + P + L K+C V +
Sbjct: 368 --------------ETEEVELSFSKNGEDLGVAFWISKDSLADRALLPHV-LCKNCVVEL 412
Query: 483 NFG----PCFKYPPKDLTY 497
NFG P F PP++ +
Sbjct: 413 NFGQKEEPFFP-PPEEFVF 430
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 45.4 bits (106), Expect = 1e-04
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 291 LHDRAPQLKISDDRLTVVGEKG-YSMVRASHGVRKGAWYFEITVDE----------MPPD 339
LH + + + S LT+ G +S RAS+GVR+G FE+ ++E P
Sbjct: 120 LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 179
Query: 340 TAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLP 399
R+GWS L + LG + FSY + G K S ++Y + + DV+G +
Sbjct: 180 HVVRIGWS--LDSCSTQLGEEPFSYGY-GGTGKKSTNSRFENYGDKFAENDVIGCF---- 232
Query: 400 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 459
D E + E+ F KNG G+A
Sbjct: 233 ADFECGNDV-------------------------------------ELSFTKNGKWMGIA 255
Query: 460 Y---KDIFEGVYFPAISLYKSCTVSINFG 485
+ K+ G L K+C V NFG
Sbjct: 256 FRIQKEALGGQALYPHVLVKNCAVEFNFG 284
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 45.4 bits (106), Expect = 1e-04
Identities = 53/209 (25%), Positives = 79/209 (37%), Gaps = 58/209 (27%)
Query: 291 LHDRAPQLKISDDRLTVVGEKG-YSMVRASHGVRKGAWYFEITVDE----------MPPD 339
LH + + + S LT+ G +S RAS+GVR+G FE+ ++E P
Sbjct: 220 LHFKVARDRSSGYPLTIEGFAYLWSGARASYGVRRGRVCFEMKINEEISVKHLPSTEPDP 279
Query: 340 TAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLP 399
R+GWS L + LG + FSY + G K S ++Y + + DV+G +
Sbjct: 280 HVVRIGWS--LDSCSTQLGEEPFSYGY-GGTGKKSTNSRFENYGDKFAENDVIGCF---- 332
Query: 400 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 459
D E + E+ F KNG G+A
Sbjct: 333 ADFECGNDV-------------------------------------ELSFTKNGKWMGIA 355
Query: 460 Y---KDIFEGVYFPAISLYKSCTVSINFG 485
+ K+ G L K+C V NFG
Sbjct: 356 FRIQKEALGGQALYPHVLVKNCAVEFNFG 384
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 44.7 bits (104), Expect = 2e-04
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 311 KGYSMVRASHGVRK--GAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRS 368
K + VRA+H + G +YFE+ + D +G S N+ G+DK SY +
Sbjct: 197 KDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHG 256
Query: 369 KKGTKFHQS-IGKHYSSGYGQGDVLGFYINLPEDT 402
G F S G+ Y + GDV+G +NL +T
Sbjct: 257 DDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINNT 291
>gi|40538736 RAN binding protein 10 [Homo sapiens]
Length = 620
Score = 44.7 bits (104), Expect = 2e-04
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 25/176 (14%)
Query: 252 AEPDPHAPDPEKLELD---CWAGKPIPGDLYRACLYERVLLALHDRAPQLKIS---DDRL 305
A DP A +P+ + G P PG+ + +R+ A++ + L S D+
Sbjct: 4 ATADPGAGNPQPGDSSGGGAGGGLPSPGEQELSRRLQRLYPAVNQQETPLPRSWSPKDKY 63
Query: 306 TVVG----------------EKGYSMVRASHGVRK--GAWYFEITVDEMPPDTAARLGWS 347
+G K + VRA+H + G +YFE+ + D +G S
Sbjct: 64 NYIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLS 123
Query: 348 QPLGNLQAPLGYDKFSYSWRSKKGTKFHQS-IGKHYSSGYGQGDVLGFYINLPEDT 402
N+ G+DK SY + G F S G+ Y + GDV+G +NL T
Sbjct: 124 AQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIGCCVNLINGT 179
>gi|14141161 heterogeneous nuclear ribonucleoprotein U isoform b
[Homo sapiens]
Length = 806
Score = 42.4 bits (98), Expect = 0.001
Identities = 70/308 (22%), Positives = 108/308 (35%), Gaps = 77/308 (25%)
Query: 203 GAKRKQQDGGTTGTTKKARSDPLFSAQR-LPPHGYPLEHPFNKDGYRYILAEPDPHAPDP 261
GA++ QQ G G T++ D +R HG ++ Y + P +
Sbjct: 202 GARQGQQQAGGDGKTEQKGGDKKRGVKRPREDHGRGYFEYIEENKYSRAKSPQPPVEEED 261
Query: 262 EKLELDCWAGKPIPGDLYRACLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHG 321
E + + D Y L+ ++ DR ++ + + G RAS+G
Sbjct: 262 EHFD-----DTVVCLDTYNCDLHFKIS---RDRLSASSLTMESFAFLWAGG----RASYG 309
Query: 322 VRKGAWYFEITVDEMPPDT----------AARLGWSQPLGNLQAPLGYDKFSYSWRSKKG 371
V KG FE+ V E P R+GWS + LG ++FSY + S KG
Sbjct: 310 VSKGKVCFEMKVTEKIPVRHLYTKDIDIHEVRIGWSLTTSGML--LGEEEFSYGY-SLKG 366
Query: 372 TKFHQSIGKHYSSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKDF 431
K + Y + + DV+ + N D
Sbjct: 367 IKTCNCETEDYGEKFDENDVITCFANFESD------------------------------ 396
Query: 432 VDKAEKSLKQTPHSEIIFYKNGVNQGVAY---KDIFEG-VYFPAISLYKSCTVSINFG-- 485
E+ + KNG + GVA+ K++ G FP + L +C V NFG
Sbjct: 397 ------------EVELSYAKNGQDLGVAFKISKEVLAGRPLFPHV-LCHNCAVEFNFGQK 443
Query: 486 --PCFKYP 491
P F P
Sbjct: 444 EKPYFPIP 451
>gi|74136883 heterogeneous nuclear ribonucleoprotein U isoform a
[Homo sapiens]
Length = 825
Score = 42.0 bits (97), Expect = 0.001
Identities = 57/217 (26%), Positives = 78/217 (35%), Gaps = 70/217 (32%)
Query: 299 KISDDRLTVVGEKGYSMV------RASHGVRKGAWYFEITVDEMPPDT----------AA 342
KIS DRL+ S RAS+GV KG FE+ V E P
Sbjct: 300 KISRDRLSASSLTMESFAFLWAGGRASYGVSKGKVCFEMKVTEKIPVRHLYTKDIDIHEV 359
Query: 343 RLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDT 402
R+GWS + LG ++FSY + S KG K + Y + + DV+ + N D
Sbjct: 360 RIGWSLTTSGML--LGEEEFSYGY-SLKGIKTCNCETEDYGEKFDENDVITCFANFESD- 415
Query: 403 ETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVAY-- 460
E+ + KNG + GVA+
Sbjct: 416 -----------------------------------------EVELSYAKNGQDLGVAFKI 434
Query: 461 -KDIFEG-VYFPAISLYKSCTVSINFG----PCFKYP 491
K++ G FP + L +C V NFG P F P
Sbjct: 435 SKEVLAGRPLFPHV-LCHNCAVEFNFGQKEKPYFPIP 470
>gi|45387949 ring finger and SPRY domain containing 1 [Homo sapiens]
Length = 576
Score = 39.7 bits (91), Expect = 0.007
Identities = 51/217 (23%), Positives = 81/217 (37%), Gaps = 58/217 (26%)
Query: 286 RVLLALHDRAPQLKISDDRLTV-VGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARL 344
R +L +D + LKIS L + VR + V G WY+E+TV ++
Sbjct: 319 RAMLNSNDVSEYLKISPHGLEARCDASSFESVRCTFCVDAGVWYYEVTV---VTSGVMQI 375
Query: 345 GW----SQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGK-HYSSGYGQGDVLGFYINLP 399
GW S+ L + +G D++S ++ + ++ + K H + +GD +GF ++L
Sbjct: 376 GWATRDSKFLNHEGYGIGDDEYSCAYDGCRQLIWYNARSKPHIHPCWKEGDTVGFLLDLN 435
Query: 400 EDTETAKSLPDTYKDKALIKFKSYLYFEEKDFVDKAEKSLKQTPHSEIIFYKNGVNQGVA 459
E ++IF+ NG NQ
Sbjct: 436 E--------------------------------------------KQMIFFLNG-NQLPP 450
Query: 460 YKDIFEGV---YFPAISLYKSCTVSINFG-PCFKYPP 492
K +F +F A S NFG FKYPP
Sbjct: 451 EKQVFSSTVSGFFAAASFMSYQQCEFNFGAKPFKYPP 487
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 37.4 bits (85), Expect = 0.035
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 65 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMT 124
L +Q N K + S+ ++RT D+H T S +KD P DK + T K
Sbjct: 1400 LNEQGNFKSLSQSSK-----EARTSDKHDSTRASSNKDFTPNRDKKTDYDTREYSSSKRR 1454
Query: 125 WPNNIVKTMSKERDVFLVKEHPDPGSKD---PEEDYPKFGLLDQDLSNIGPAYDNQ 177
N +++ +D + G K+ E D PK G D SN P+ D +
Sbjct: 1455 DEKN---ELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRK 1507
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 37.4 bits (85), Expect = 0.035
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 11/116 (9%)
Query: 65 LRKQANLKEMCLSALANLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMT 124
L +Q N K + S+ ++RT D+H T S +KD P DK + T K
Sbjct: 1434 LNEQGNFKSLSQSSK-----EARTSDKHDSTRASSNKDFTPNRDKKTDYDTREYSSSKRR 1488
Query: 125 WPNNIVKTMSKERDVFLVKEHPDPGSKD---PEEDYPKFGLLDQDLSNIGPAYDNQ 177
N +++ +D + G K+ E D PK G D SN P+ D +
Sbjct: 1489 DEKN---ELTRRKDSPSRNKDSASGQKNKPREERDLPKKGTGDSKKSNSSPSRDRK 1541
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 36.6 bits (83), Expect = 0.059
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 14/109 (12%)
Query: 131 KTMSKERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLN 190
++ +KE+D+ P P SKDP+ ++ G QSS++ +S N N
Sbjct: 803 QSAAKEKDLLPSPAGPVP-SKDPKTEH-------------GSRKRTISQSSSLKSSSNSN 848
Query: 191 GGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPLE 239
+ S +K+K+ +G T+ ++K+ + S+ PP L+
Sbjct: 849 KETSGSSKNSSSTSKQKKTEGKTSSSSKEVKEKAPSSSSNCPPSAPTLD 897
>gi|24308203 CSRP2 binding protein isoform a [Homo sapiens]
Length = 782
Score = 36.2 bits (82), Expect = 0.077
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 23 CGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALANL 82
C C KW A + S L + F C+ C G + R + +++ + A+ NL
Sbjct: 77 CDKCQKWIPASQLR-EQLSYLKGDNFFRFTCSDCSADGKEQYERLKLTWQQVVMLAMYNL 135
Query: 83 TWQSRTQDEHPKTMFSKDKDIIPFIDKYWECMTTRQRPGKMTWPNNIVKTMSKERDVFL- 141
+ + + + F +DI FI+K+W + R TW + + +S ++
Sbjct: 136 SLEGSGRQGY----FRWKEDICAFIEKHWTFL-LGNRKKTSTWWSTVAGCLSVGSPMYFR 190
Query: 142 --VKEHPDPG 149
+E +PG
Sbjct: 191 SGAQEFGEPG 200
>gi|4505777 PHD finger protein 1 isoform a [Homo sapiens]
Length = 457
Score = 34.3 bits (77), Expect = 0.29
Identities = 55/247 (22%), Positives = 87/247 (35%), Gaps = 31/247 (12%)
Query: 21 LQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFLRKQANLKEMCLSALA 80
LQC C +WF + L Y F C VC G R Q ++ L
Sbjct: 202 LQCRSCLQWFHEACTQCLSKPLLYGDRFYEFECCVCR-GGPEKVRRLQLRWVDVAHLVLY 260
Query: 81 NLTWQSRTQDEHPKTMFSKDKDIIPFIDKYWECM--------TTRQRPGKMTWPNNIVK- 131
+L+ + K F D++I+PF + W+ + +R K+ N K
Sbjct: 261 HLSVCCK------KKYFDFDREILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKD 314
Query: 132 ------TMSKERDVFLVKEHPDPGSKDPEED--YPKFGLLDQDLSNIGPAYDNQKQSSAV 183
+ K + +F + P + P D + G + L++ G A + ++
Sbjct: 315 RFISGREIKKRKCLFGLHARMPPPVEPPTGDGALTRAGPWGRGLTSPGEAPEAGARAPEE 374
Query: 184 STSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPLFSAQRLPPHGYPL----- 238
G G A SS + A + G + T A S L + LP PL
Sbjct: 375 EAEGESGGAGATLSSAQSARAPGAEGAGSSAEGTAAAPSGCLLPSTLLPAPQGPLGTVDP 434
Query: 239 --EHPFN 243
HP+N
Sbjct: 435 QTGHPWN 441
>gi|157168349 F-box and leucine-rich repeat protein 19 [Homo
sapiens]
Length = 694
Score = 33.1 bits (74), Expect = 0.65
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 12/113 (10%)
Query: 166 DLSNIGPAYDNQKQSSAVSTSGNLNGGIAAGSSGKGRGAKRKQQDGGTTGTTKKARSDPL 225
D S+ D+ SS S S + G A RG+ ++++ G + PL
Sbjct: 322 DTSSSSSDSDSDSDSSGTSLSEDEAPGEARNGRRPARGSSGEKENRGGRRAVRPGSGGPL 381
Query: 226 FS---AQRLPPHGYPLEHPFNKDGYRYILAEPDPHAPDPEKLELDCWAGKPIP 275
S PP LE R+++ P P +P+P+ L L + P+P
Sbjct: 382 LSWPLGPAPPPRPPQLE--------RHVV-RPPPRSPEPDTLPLAAGSDHPLP 425
>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
Length = 386
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 168 SNIGPAYDNQKQSSAVSTSGNLNGGIAAG--SSGKGRGAKRKQQDGGTTGTTKKARSD 223
SN G +Q SS ++G+ N G ++G SSG G GG++G + +R D
Sbjct: 242 SNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNSGGSRGD 299
>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
Length = 398
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 168 SNIGPAYDNQKQSSAVSTSGNLNGGIAAG--SSGKGRGAKRKQQDGGTTGTTKKARSD 223
SN G +Q SS ++G+ N G ++G SSG G GG++G + +R D
Sbjct: 242 SNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNSGGSRGD 299
>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
Length = 416
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 168 SNIGPAYDNQKQSSAVSTSGNLNGGIAAG--SSGKGRGAKRKQQDGGTTGTTKKARSD 223
SN G +Q SS ++G+ N G ++G SSG G GG++G + +R D
Sbjct: 242 SNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNSGGSRGD 299
>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
Length = 476
Score = 32.7 bits (73), Expect = 0.85
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 168 SNIGPAYDNQKQSSAVSTSGNLNGGIAAG--SSGKGRGAKRKQQDGGTTGTTKKARSD 223
SN G +Q SS ++G+ N G ++G SSG G GG++G + +R D
Sbjct: 242 SNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSGGSSGGSSGNSGGSRGD 299
>gi|54607108 zinc finger, MIZ-type containing 2 isoform 1 [Homo
sapiens]
Length = 920
Score = 32.7 bits (73), Expect = 0.85
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 165 QDLSNIGPAYDNQKQSSAVSTSGNLNG-GIAAGSSGKGRGAKRKQQDGG--TTGTTKKAR 221
Q+LS G Q +S G G + AG + G G T+ A
Sbjct: 177 QELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
Query: 222 SDPLFSAQRLPPHGY---PLEHPFNKDGYRYILAEPDP 256
PL++ QRLP HGY P P + G + +E P
Sbjct: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYP 274
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 32.7 bits (73), Expect = 0.85
Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 6/98 (6%)
Query: 165 QDLSNIGPAYDNQKQSSAVSTSGNLNG-GIAAGSSGKGRGAKRKQQDGG--TTGTTKKAR 221
Q+LS G Q +S G G + AG + G G T+ A
Sbjct: 177 QELSQYGAMGAGQSFNSQFLQHGGPRGPSVPAGMNPTGIGGVMGPSGLSPLAMNPTRAAG 236
Query: 222 SDPLFSAQRLPPHGY---PLEHPFNKDGYRYILAEPDP 256
PL++ QRLP HGY P P + G + +E P
Sbjct: 237 MTPLYAGQRLPQHGYPGPPQAQPLPRQGVKRTYSEVYP 274
>gi|4506857 chemokine (C-X3-C motif) ligand 1 [Homo sapiens]
Length = 397
Score = 32.3 bits (72), Expect = 1.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 136 ERDVFLVKEHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDNQKQSSAVSTSGNLNGGIAA 195
E+ + VK P + +E + S++ P +Q+ A+ TS L G+
Sbjct: 104 EKQIGEVKPRTTPAAGGMDESVVLEPEATGESSSLEPTPSSQEAQRALGTSPELPTGVT- 162
Query: 196 GSSGKGRGAKRKQQDGGTTGT 216
GSSG K QDGG GT
Sbjct: 163 GSSGTRLPPTPKAQDGGPVGT 183
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 144 EHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDN---QKQSSAVSTSGNLNGGIAAGSSGK 200
+ P P +K+ ++ K GL Q A N +K++S GG A+ +GK
Sbjct: 585 DEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEGGFASPRTGK 644
Query: 201 GRGAKRKQQDGGTT------GTTKKARSDP 224
G+ KRK GG + T+KK + +P
Sbjct: 645 GKW-KRKSAGGGPSRAGSPRRTSKKTKVEP 673
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 144 EHPDPGSKDPEEDYPKFGLLDQDLSNIGPAYDN---QKQSSAVSTSGNLNGGIAAGSSGK 200
+ P P +K+ ++ K GL Q A N +K++S GG A+ +GK
Sbjct: 598 DEPGPWTKEGKDRIKKLGLTMQYPEGYLEALANREREKENSKREEEEQQEGGFASPRTGK 657
Query: 201 GRGAKRKQQDGGTT------GTTKKARSDP 224
G+ KRK GG + T+KK + +P
Sbjct: 658 GKW-KRKSAGGGPSRAGSPRRTSKKTKVEP 686
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,575,259
Number of Sequences: 37866
Number of extensions: 1185977
Number of successful extensions: 3194
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 3140
Number of HSP's gapped (non-prelim): 88
length of query: 534
length of database: 18,247,518
effective HSP length: 107
effective length of query: 427
effective length of database: 14,195,856
effective search space: 6061630512
effective search space used: 6061630512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.