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Search of human proteins with 157278361
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|157278361 nuclear localized factor 2 [Homo sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|157278361 nuclear localized factor 2 [Homo sapiens] 735 0.0
gi|147903292 nuclear localized factor 1 [Homo sapiens] 548 e-156
gi|210147453 nuclear localized factor 3 [Homo sapiens] 167 1e-41
gi|209862787 hypothetical protein LOC100191040 [Homo sapiens] 122 5e-28
gi|239755232 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239749768 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo ... 43 4e-04
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 42 9e-04
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 41 0.001
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 41 0.002
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 41 0.002
gi|163965366 nascent polypeptide-associated complex alpha subuni... 40 0.003
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 40 0.003
gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens] 40 0.003
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 40 0.004
gi|23510413 sorting nexin 26 [Homo sapiens] 40 0.004
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 39 0.006
gi|110611914 progesterone receptor [Homo sapiens] 39 0.007
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 39 0.010
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 39 0.010
gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo sap... 39 0.010
gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens] 39 0.010
gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens] 39 0.010
gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo ... 38 0.012
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 38 0.012
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 38 0.012
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 38 0.012
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 38 0.012
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 38 0.012
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.016
>gi|157278361 nuclear localized factor 2 [Homo sapiens]
Length = 364
Score = 735 bits (1897), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MRLLEKLCSSAAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAA 60
MRLLEKLCSSAAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAA
Sbjct: 1 MRLLEKLCSSAAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAA 60
Query: 61 ESDLWPRAADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGP 120
ESDLWPRAADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGP
Sbjct: 61 ESDLWPRAADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGP 120
Query: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP 180
PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP
Sbjct: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP 180
Query: 181 DGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAK 240
DGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAK
Sbjct: 181 DGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAK 240
Query: 241 GTVALGRAGDALRLAAEYCPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVLRPPGTAR 300
GTVALGRAGDALRLAAEYCPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVLRPPGTAR
Sbjct: 241 GTVALGRAGDALRLAAEYCPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVLRPPGTAR 300
Query: 301 WQCSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSLGA 360
WQCSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSLGA
Sbjct: 301 WQCSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSLGA 360
Query: 361 LLLL 364
LLLL
Sbjct: 361 LLLL 364
>gi|147903292 nuclear localized factor 1 [Homo sapiens]
Length = 369
Score = 548 bits (1411), Expect = e-156
Identities = 288/347 (82%), Positives = 296/347 (85%), Gaps = 15/347 (4%)
Query: 20 AFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAAESDLWPRAA--DEDAGRTD 77
A A VLTP+RIPEFCIPPRL L AA + W A DE AGRTD
Sbjct: 36 ACANVLTPDRIPEFCIPPRLMPRLAL-------------AALRNSWVEEAGMDEGAGRTD 82
Query: 78 WDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPD 137
WDPRSQAALSLPHLPRVRT YGFCALLESPHTRRKESLLLGGPPAPRPRAH+ GGGGGPD
Sbjct: 83 WDPRSQAALSLPHLPRVRTAYGFCALLESPHTRRKESLLLGGPPAPRPRAHTYGGGGGPD 142
Query: 138 APLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRAGRSRRLA 197
A LGTL PR PGPATPAAPG PR PQDALA PR CRLLRVPDGLLSRALRAGRSRRL
Sbjct: 143 ALLGTLRVPRAPGPATPAAPGCPRPPQDALARRPRGCRLLRVPDGLLSRALRAGRSRRLT 202
Query: 198 RVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAKGTVALGRAGDALRLAAE 257
RVRSVSSGNED+ERRAGS+SPARAPS+SP SSR P PERLEA+GTVALGRAGDALRLAAE
Sbjct: 203 RVRSVSSGNEDKERRAGSQSPARAPSTSPPSSRVPFPERLEAEGTVALGRAGDALRLAAE 262
Query: 258 YCPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVLRPPGTARWQCSAVVGRSRKASFDQ 317
YCPGT RLRLRLLRAES GGAPGPRAV CRLSLVLRPPGTA QCS VVGRSRKASFDQ
Sbjct: 263 YCPGTGRLRLRLLRAESPAGGAPGPRAVSCRLSLVLRPPGTALRQCSTVVGRSRKASFDQ 322
Query: 318 DFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSLGALLLL 364
DFCFDGLSEDEVRRLAVRVKARDEGRGR+RGRLLGQGELSLGALLLL
Sbjct: 323 DFCFDGLSEDEVRRLAVRVKARDEGRGRERGRLLGQGELSLGALLLL 369
>gi|210147453 nuclear localized factor 3 [Homo sapiens]
Length = 421
Score = 167 bits (423), Expect = 1e-41
Identities = 144/410 (35%), Positives = 195/410 (47%), Gaps = 74/410 (18%)
Query: 10 SAAGSSAPK-PAFAKVLTPNRIPEFCIPPRLPA------------PCTLESPIRAAA--- 53
S AG A K P ++ VLTP++IP+F IPP+LP+ P T E + +AA
Sbjct: 26 SEAGDKASKGPLYSNVLTPDKIPDFFIPPKLPSGPAEGEGQAALGPSTSEQNLASAAPRQ 85
Query: 54 ------VPRRCAAESDLWPRAA--------------DEDAGRTDWDPRSQAALSLPHLPR 93
+P + AAES +AA E+A TD DP++Q A+SLP +P+
Sbjct: 86 TPRSPRLPAKLAAESKSLLKAATRHVIQIESAEDWLSEEA--TDADPQAQGAMSLPSVPK 143
Query: 94 VRTTYGFCALLESPHTRRKESLL---------LGGPPAPRPR--AHSCGGGGGPDAPLGT 142
+T+YGF L ESPHTRRKESL +G P A R R A + GG GGP G
Sbjct: 144 AQTSYGFAMLAESPHTRRKESLFHSEHGALAQVGSPGAGRRRAAAKANGGDGGPREAGGA 203
Query: 143 LCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRAGRSRRLARVRSV 202
L P GG + + P LLSR++ + V
Sbjct: 204 LMSP------GRYFSGGESDTGSSAESSP-------FGSPLLSRSVSLLKGFAQDSQAKV 250
Query: 203 SSGNEDEERRAGSESPARAPSSSPLSSR--------APLPERLEAKG--TVALGRAGDAL 252
S R + P +SP S R P PE +A+G TV +G G ++
Sbjct: 251 SQLRHSVGRHGSLSADDSTPDASPGSRRRLTRRAPPEPGPESGQARGEHTVHVGPRG-SV 309
Query: 253 RLAAEYCPGTRRLRLRLLRAESLFGGAPGPRAVRCRLSLVLRPPGTARWQCSAVVGRSRK 312
RL AEY G RLR+ LL AE L+ R++ C + L L PG + Q S +V SR+
Sbjct: 310 RLLAEYEAGQARLRVHLLAAEGLYDRLCDARSINCCVGLCL-VPGKLQKQRSTIVKNSRR 368
Query: 313 ASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSLGALL 362
F++DF FDGL VR+LA+R+K ++G R LLG+ EL L +LL
Sbjct: 369 PVFNEDFFFDGLGPASVRKLALRIKVVNKGSSLKRDTLLGEKELPLTSLL 418
>gi|209862787 hypothetical protein LOC100191040 [Homo sapiens]
Length = 353
Score = 122 bits (306), Expect = 5e-28
Identities = 131/364 (35%), Positives = 156/364 (42%), Gaps = 63/364 (17%)
Query: 7 LCSSAAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAAESDLWP 66
L S P A VLTP+RIP+F IPPRLP P AVP
Sbjct: 25 LFSKRRAPGPPTSACPNVLTPDRIPQFFIPPRLPDP--------GGAVPA---------- 66
Query: 67 RAADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPR-- 124
A AGR A SLPHL G+ L ESPHTRR+ESL G PPAP
Sbjct: 67 -ARRHVAGRG-----LPATCSLPHLAGRE---GWAFLPESPHTRRRESLFHGPPPAPAGG 117
Query: 125 -PRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGL 183
P A S PD LC R P T ++P D+ G R L R
Sbjct: 118 LPAAQSRLHVSAPDL---RLC--RAPDSDTASSP-------DSSPFGSPRPGLGR----- 160
Query: 184 LSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARA-PSSSPLSSRAPLPERLE--AK 240
RR++R S+S + SP RA P + PL L +L +
Sbjct: 161 ----------RRVSRPHSLSP-EKASSADTSPHSPRRAGPPTPPLFHLDFLCCQLRPTRE 209
Query: 241 GTVALGRAGDALRLAAEYCPGTRRLRLRLLRAESL--FGGAPGPRAVRCRLSLVLRPPGT 298
+ LG G LRL+ EY G RLRLRL+ AE L PG C + L LRP
Sbjct: 210 SVLRLGPRGGQLRLSTEYQAGPGRLRLRLVSAEGLPRPRSRPGSGGGGCCVVLRLRPRVR 269
Query: 299 ARWQCSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGRLLGQGELSL 358
R Q S VV S F++DF FDGL ++ ++R K D G G R LLG+ E L
Sbjct: 270 PREQQSRVVKCSANPIFNEDFFFDGLGPPDLAARSLRAKVLDRGAGLRRDVLLGECETPL 329
Query: 359 GALL 362
ALL
Sbjct: 330 IALL 333
>gi|239755232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 501
Score = 43.1 bits (100), Expect = 4e-04
Identities = 57/189 (30%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 120 PPAPRPRAHSCGGGGGPDAPLGTLCGPRGP------------------GPATPAAPG-GP 160
PP PRPR H L T C PR P GP A G
Sbjct: 305 PPLPRPRPH-----------LLTRCPPRAPRLRRLEAGRRLRRTAAPLGPVAGAGSSFGG 353
Query: 161 RLPQDALAAGPRRCRLLRVPDGLL-SRALRAGRSRRL--ARVRSVSSGNEDEERRAGSE- 216
R + +LA G R R P LL + A+R + L + R+ G D RR G
Sbjct: 354 RPHRPSLALGSDR-RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQGGSDRHRRRGQSG 412
Query: 217 ------SPARAPSSSPLSSRAPLPERLEAKGTVALGRAGDAL------------RLAAEY 258
+ A A +SP+ +R P P RL LG AG L R
Sbjct: 413 ASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPRLEGRGGAAPPAGKRGLLIG 472
Query: 259 CPGTRRLRL 267
C G RRLRL
Sbjct: 473 CEGDRRLRL 481
>gi|239749768 PREDICTED: hypothetical protein [Homo sapiens]
Length = 591
Score = 43.1 bits (100), Expect = 4e-04
Identities = 57/189 (30%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 120 PPAPRPRAHSCGGGGGPDAPLGTLCGPRGP------------------GPATPAAPG-GP 160
PP PRPR H L T C PR P GP A G
Sbjct: 395 PPLPRPRPH-----------LLTRCPPRAPRLRRLEAGRRLRRTAAPLGPVAGAGSSFGG 443
Query: 161 RLPQDALAAGPRRCRLLRVPDGLL-SRALRAGRSRRL--ARVRSVSSGNEDEERRAGSE- 216
R + +LA G R R P LL + A+R + L + R+ G D RR G
Sbjct: 444 RPHRPSLALGSDR-RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQGGSDRHRRRGQSG 502
Query: 217 ------SPARAPSSSPLSSRAPLPERLEAKGTVALGRAGDAL------------RLAAEY 258
+ A A +SP+ +R P P RL LG AG L R
Sbjct: 503 ASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPRLEGRGGAAPPAGKRGLLIG 562
Query: 259 CPGTRRLRL 267
C G RRLRL
Sbjct: 563 CEGDRRLRL 571
>gi|239744027 PREDICTED: hypothetical protein XP_002343007 [Homo
sapiens]
Length = 591
Score = 43.1 bits (100), Expect = 4e-04
Identities = 57/189 (30%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 120 PPAPRPRAHSCGGGGGPDAPLGTLCGPRGP------------------GPATPAAPG-GP 160
PP PRPR H L T C PR P GP A G
Sbjct: 395 PPLPRPRPH-----------LLTRCPPRAPRLRRLEAGRRLRRTAAPLGPVAGAGSSFGG 443
Query: 161 RLPQDALAAGPRRCRLLRVPDGLL-SRALRAGRSRRL--ARVRSVSSGNEDEERRAGSE- 216
R + +LA G R R P LL + A+R + L + R+ G D RR G
Sbjct: 444 RPHRPSLALGSDR-RSPEAPHYLLWAAAVRGQEAHSLWPLQPRARRQGGSDRHRRRGQSG 502
Query: 217 ------SPARAPSSSPLSSRAPLPERLEAKGTVALGRAGDAL------------RLAAEY 258
+ A A +SP+ +R P P RL LG AG L R
Sbjct: 503 ASGLGTAAAGAERTSPVGARPPPPARLVTNTAPTLGGAGPRLEGRGGAAPPAGKRGLLIG 562
Query: 259 CPGTRRLRL 267
C G RRLRL
Sbjct: 563 CEGDRRLRL 571
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 42.0 bits (97), Expect = 9e-04
Identities = 61/221 (27%), Positives = 83/221 (37%), Gaps = 46/221 (20%)
Query: 138 APLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRAGRSRRLA 197
A G G GPGP+ PA P PR P + + R P LSRA + + RR
Sbjct: 229 AARGPRSGDPGPGPSHPAQPKAPRFPSNIIVTN----GAAREPRRTLSRAAVSVQERRAQ 284
Query: 198 RVRSV--------SSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAKGTVALG--- 246
+ ++ ++G+ E G SP R L A E L A G G
Sbjct: 285 VLATIHGHAGAFPAAGDAGEGAPGGGSSPERVARGRGLPGPA---ESLRAGGQAPRGPAL 341
Query: 247 -----RAGDALRLA-AEYCPGTRRLRLR------LLRAESLFGGAPGPRAVRCRLSLVLR 294
A +AL+ A + + P + L R RA F PGPR +
Sbjct: 342 ANGFPSAHEALKSAPSSFAPAGKSLCFRPGPALPSTRARQSF---PGPR----------Q 388
Query: 295 PPGTARWQCSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVR 335
P G W+ + + R + F G SE E RR A+R
Sbjct: 389 PNGAQDWRRADSLPRPQ--GITVQFAGRGSSE-EARREALR 426
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 41.2 bits (95), Expect = 0.001
Identities = 61/219 (27%), Positives = 79/219 (36%), Gaps = 49/219 (22%)
Query: 92 PRVRTTYGFCALLESPHTRRKESLLLGG------PPAPRPR----------AHSCGGGGG 135
P GF ++ T + + L+GG PPAPRPR A GG
Sbjct: 4 PNASACSGFLQTSDNLGTIKAKHSLVGGARAKATPPAPRPRPGGFRPPLQRARCYRAAGG 63
Query: 136 PDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLL--------RVPDGL-LSR 186
G GPR A AAP P + ++ A PR RLL V DG LS
Sbjct: 64 RGRETGNAQGPRLALQARAAAPAFPAASRRSVPA-PRGRRLLLPGAVAACAVSDGQPLSP 122
Query: 187 ALRAGRSRRLARVRSVSSGN----------EDEERRAGSESPARAPSSSPLSSRAPLPER 236
LR R A +++S + R G+ A AP S S+ A LPER
Sbjct: 123 PLRQPRPAARAPEGALASCGLRAGWAGWPPQAAWRAWGASVDAAAPPSEAASAEARLPER 182
Query: 237 -------------LEAKGTVALGRAGDALRLAAEYCPGT 262
++A G A + A E CP +
Sbjct: 183 SGPARRPGPECVPMKAPGLAQAAVAEETPDWAPELCPSS 221
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 40.8 bits (94), Expect = 0.002
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 118 GGPPAPRPRAHSCGGGG-GPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRL 176
GGPP P A GGGG G P G G GP+ P GGP + +DA A +R R
Sbjct: 28 GGPPPGPPGAGDRGGGGPGGGGPGGGSAG----GPSQPPGGGGPGIRKDAFADAVQRARQ 83
Query: 177 LRVPDGLLSRALRAGRSRRL---ARVRSVSSGNEDEERRAGSE--------SPARAPSSS 225
+ G + + + R + G++ E ++ S+ P P +
Sbjct: 84 IAAKIGGDAATTVNNSTPDFGFGGQKRQLEDGDQPESKKLASQGDSISSQLGPIHPPPRT 143
Query: 226 PLSSRAPLPERLEAKGTVALGRAGDAL 252
++ +P+ + + +GR G+ +
Sbjct: 144 SMTEEYRVPDGMVG---LIIGRGGEQI 167
Score = 29.6 bits (65), Expect = 4.4
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 135 GPDAPLGTLCGPRGPGPATPAAPGGP 160
GP P+G GP GPGPA P P P
Sbjct: 497 GPLCPVGP--GPGGPGPAGPMGPFNP 520
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 40.8 bits (94), Expect = 0.002
Identities = 52/163 (31%), Positives = 61/163 (37%), Gaps = 27/163 (16%)
Query: 84 AALSLPHLPRVR---TTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSC---------- 130
A L+ P PR R T AL + R L LG P PRP
Sbjct: 472 ATLAPPTPPRPRDGGTPRHSRALSWAARAARPLPLFLGRAPPPRPAVEQPPPKVYVTRVR 531
Query: 131 -GGGGGPDAPLGTLCGPRGPGPATPAAPGGPR-LPQDALAAGPRRCRLLRVPDGLLSRAL 188
G P AP PR P P P PR LP+ L A PR R P G +
Sbjct: 532 PGQRASPRAP-----APRAPWPPFPGVFLHPRPLPRVQLRAPPRPPR----PHGRRTGGP 582
Query: 189 RAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRA 231
+A + R AR ++ G E + R G PA S LSS A
Sbjct: 583 QATQPRPPARAQATQGGREGQARTLG---PAAPTVDSNLSSEA 622
Score = 29.3 bits (64), Expect = 5.8
Identities = 31/96 (32%), Positives = 35/96 (36%), Gaps = 16/96 (16%)
Query: 145 GPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRA-GRSRRLARVRSVS 203
GP+ P PA PA PG P P R R DG R RA + R AR +
Sbjct: 458 GPQSPAPAAPAQPGATLAPPT-----PPRPR-----DGGTPRHSRALSWAARAARPLPLF 507
Query: 204 SGNEDEERRAGSESP-----ARAPSSSPLSSRAPLP 234
G R A + P R S RAP P
Sbjct: 508 LGRAPPPRPAVEQPPPKVYVTRVRPGQRASPRAPAP 543
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 40.4 bits (93), Expect = 0.003
Identities = 41/148 (27%), Positives = 51/148 (34%), Gaps = 22/148 (14%)
Query: 17 PKPAFAKVLTPNRIPEFCIPPRLPA-PCTLESPIRAAAVPRRCAAESDLWPRAADEDAGR 75
P P+ + P P P + PA T SP +A A P + P+ A
Sbjct: 886 PTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA 945
Query: 76 TDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGG 135
T P+ A P A SP GGP P P+ G
Sbjct: 946 TPPSPKGGPATPSPKWAPTPPA----ATPPSPK---------GGPATPSPK-------GA 985
Query: 136 PDAPLGTLCGPRGPGPATPAAPGGPRLP 163
P P T P+G GPATP+ G P P
Sbjct: 986 PTPPAATPPSPKG-GPATPSPKGAPTPP 1012
Score = 36.2 bits (82), Expect = 0.047
Identities = 43/158 (27%), Positives = 60/158 (37%), Gaps = 9/158 (5%)
Query: 9 SSAAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAP--CTLESPIRAAAVPRRCAAESDLWP 66
+S + AP P A +P P P P P T SP A P A + P
Sbjct: 932 ASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPT---P 988
Query: 67 RAADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPR 126
AA + + P + + P P V + +P + + PP+P+
Sbjct: 989 PAATPPSPKGG--PATPSPKGAPTPPAVTPPSPKGSPAATPFPKGASTPPAATPPSPKGS 1046
Query: 127 -AHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLP 163
A + G P P TL P+G GPATP+ G P P
Sbjct: 1047 PAATPLPKGAPTTPAATLPSPKG-GPATPSLKGAPTPP 1083
Score = 34.7 bits (78), Expect = 0.14
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 10/132 (7%)
Query: 104 LESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLP 163
L +P + + PP+P+ + G P P T P+G GPATP G P P
Sbjct: 1209 LATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG-GPATPPPKGAPTPP 1267
Query: 164 QDALAAGPRRCRLLRVPDGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPS 223
AA P + GL + + + + S G + PA P
Sbjct: 1268 ----AATPPSLK-----GGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPP 1318
Query: 224 SSPLSSRAPLPE 235
S S P P+
Sbjct: 1319 SPKGSPGTPPPK 1330
Score = 32.7 bits (73), Expect = 0.52
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 118 GGPPAPRPRAHSCGGGGGPDAPLGTLCGPRGPG-PATPAAPGGPRLPQDALAAGP 171
GGP P P+ P +P G L P G P TPAA P P+ LA P
Sbjct: 1092 GGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAAT--PPSPKGGLATPP 1144
Score = 32.0 bits (71), Expect = 0.89
Identities = 56/227 (24%), Positives = 74/227 (32%), Gaps = 26/227 (11%)
Query: 16 APKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAAESDLWPRAADEDAGR 75
AP P A +P P P P P + P P+ A + +P+ A
Sbjct: 985 APTPPAATPPSPKGGPATPSPKGAPTPPAVTPPS-----PKGSPAATP-FPKGASTPPAA 1038
Query: 76 TDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGG 135
T P+ A + LP+ T A L SP L G P P S GG
Sbjct: 1039 TPPSPKGSPAAT--PLPKGAPTTP-AATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPA 1095
Query: 136 PDAPLG-------TLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRAL 188
+P G T P+G G ATP G P P A P+ GL +
Sbjct: 1096 TPSPKGAPMPPAATPPSPKG-GLATPPHKGAPTTPA-ATPPSPK--------GGLATPPP 1145
Query: 189 RAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPE 235
+ + A S G + +PA P S P P+
Sbjct: 1146 KGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPK 1192
Score = 30.8 bits (68), Expect = 2.0
Identities = 39/150 (26%), Positives = 51/150 (34%), Gaps = 9/150 (6%)
Query: 16 APKPAFAKVLTPNRIPEFCIPPRLPAP--CTLESPIRAAAVPRRCAAESDLWPRAADEDA 73
AP P A +P P P P P T SP A P A + P A
Sbjct: 1079 APTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTT--PAATPPSP 1136
Query: 74 GRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGG 133
P + A + P G L +P + + PP+P+ +
Sbjct: 1137 KGGLATPPPKGAPTTPAATPPSPKGG----LATPPPKGAPTTPAATPPSPKGGLATPSPK 1192
Query: 134 GGPDAPLGTLCGPRGPGPATPAAPGGPRLP 163
G P P T P+G G ATP+ G P P
Sbjct: 1193 GAPTTPAATPPSPKG-GLATPSPKGAPTTP 1221
Score = 28.9 bits (63), Expect = 7.6
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 19/130 (14%)
Query: 37 PRLPAPC-TLESPIRAAAVPRRCAAESDLWPRAADEDAGRTDWDPRSQAALSLPHLPRVR 95
P +P+P SP P++ A AA G D P + +SL P
Sbjct: 1393 PAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKG--DLTPPAVTPVSLKKAPATS 1450
Query: 96 TTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDAP--LGTLCGPRGPGPAT 153
G A +P ++ +L PP+P+ P AP + T P+ PAT
Sbjct: 1451 APKGGPA---TPSSKGDPTLPAVTPPSPKE----------PPAPKQVATSSSPK-KAPAT 1496
Query: 154 PAAPGGPRLP 163
PA G P LP
Sbjct: 1497 PAPMGAPTLP 1506
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 40.0 bits (92), Expect = 0.003
Identities = 51/181 (28%), Positives = 62/181 (34%), Gaps = 26/181 (14%)
Query: 118 GGPPAPRPRAHSCGGGGGPDAPLGTL---------CGPRGPGPATPA-APGGPRLPQDAL 167
GG P P A G P P P GPGPA P P LP +A
Sbjct: 7 GGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAA 66
Query: 168 AAGPRRCRLLRVPDGLLSRALRAGRSRRLARVRSVSSG-NEDEERRAGSESPARAPSSS- 225
G R R LR D R G + + G E + AG E PAR P S
Sbjct: 67 DEGGPRGR-LRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQCSPAGPEGPARGPKVSF 125
Query: 226 ----PLSSRAPLPERLEAKGTVALGRAGDALRLAAEYC---------PGTRRLRLRLLRA 272
S AP P E G+ G AG+ A + PG + LR+ +
Sbjct: 126 SCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQASFMQRQFGALLQPGVNKFSLRMFGS 185
Query: 273 E 273
+
Sbjct: 186 Q 186
Score = 32.7 bits (73), Expect = 0.52
Identities = 48/176 (27%), Positives = 64/176 (36%), Gaps = 45/176 (25%)
Query: 83 QAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDAPLGT 142
Q A ++ P+V L SP R+ PP P P A S
Sbjct: 731 QQAAAMSFCPQVARPLVGPLALGSPRLVRRP------PPGPAPAAAS------------- 771
Query: 143 LCGPRGPGPATPAAPGG----PRLPQDALAAGPRRCRLLRVPDGLLSRALRAGRSRRLAR 198
PGP PA+P G PR P+ + G L P L AL A R R +R
Sbjct: 772 ------PGPPPPASPPGAPASPRAPRTSPYGG-----LPAAP--LAGPALPARRLSRASR 818
Query: 199 VRSVSS--------GNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAKGTVALG 246
S S G R A S +P P+ + ++ AP P+R ++ A G
Sbjct: 819 PLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAA-APSPDRRDSASPGAAG 873
Score = 29.6 bits (65), Expect = 4.4
Identities = 41/144 (28%), Positives = 48/144 (33%), Gaps = 43/144 (29%)
Query: 36 PPRLPAPCTLESPIRAAAVPRRCAAESDLWPRAADEDAGRTDWDPRSQAALSLPHLPRVR 95
PP P P + P RA A+P P AADE R R+R
Sbjct: 43 PPPGPGPAPPQHPPRAEALP----------PEAADEGGPR----------------GRLR 76
Query: 96 TTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDAPLGTLCGPRGP------ 149
+ C P T S G P CG G +P G RGP
Sbjct: 77 SRDSSCG---RPGTPGAASTAKGSPNG------ECGRGEPQCSPAGPEGPARGPKVSFSC 127
Query: 150 -GPATPAAPG-GPRLPQDALAAGP 171
G A+ APG GP + AGP
Sbjct: 128 RGAASGPAPGPGPAEEAGSEEAGP 151
>gi|8922077 adenosine deaminase, RNA-specific, B2 [Homo sapiens]
Length = 739
Score = 40.0 bits (92), Expect = 0.003
Identities = 43/139 (30%), Positives = 59/139 (42%), Gaps = 31/139 (22%)
Query: 120 PPAPRPRAHSCGGGGGPDAPLGTLCGPR----------GPGPATPAAPG--GPRLPQDAL 167
PPAPRP GG G A L G R GP PATPAAPG P + + L
Sbjct: 229 PPAPRPGL--AGGRPGDAALLSAAYGRRRLLCRALDLVGPTPATPAAPGERNPVVLLNRL 286
Query: 168 AAG----------PRRCRLLRVPDGLLSRALR-AGRSRRLARVRSVSSGNEDEERRAGSE 216
AG RR R + + R +GRS++LAR ++ + ++ +
Sbjct: 287 RAGLRYVCLAEPAERRARSFVMAVSVDGRTFEGSGRSKKLARGQAAQAALQE---LFDIQ 343
Query: 217 SPARAPSSSPLSSRAPLPE 235
P AP + R P+P+
Sbjct: 344 MPGHAPGR---ARRTPMPQ 359
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 39.7 bits (91), Expect = 0.004
Identities = 19/44 (43%), Positives = 20/44 (45%)
Query: 120 PPAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLP 163
PP P PR G GGP P G GP P P GGP +P
Sbjct: 351 PPPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMP 394
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 10/61 (16%)
Query: 118 GGPPAPRPRAHSCG--------GGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAA 169
GGPP P P A G GGP P+ P P P++ P P LP + A
Sbjct: 365 GGPPPPPPPATGRSGPLPPPPPGAGGP--PMPPPPPPPPPPPSSGNGPAPPPLPPALVPA 422
Query: 170 G 170
G
Sbjct: 423 G 423
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 39.7 bits (91), Expect = 0.004
Identities = 71/263 (26%), Positives = 93/263 (35%), Gaps = 50/263 (19%)
Query: 12 AGSSAPKPAFAKVLTP---NRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAA---ESDLW 65
A + +P ++V TP + P C+PP L P P+ + A S L
Sbjct: 854 AAAQSPCSVPSQVPTPGFFSPAPRECLPPFLGVPKPGLYPLGPPSFQPSSPAPVWRSSLG 913
Query: 66 PRAADE-------DAGRTDWDPRSQAALS---LPHLPRVRTTYGFCALLESPHTRRKESL 115
P A + + G ++ P S S +P R + L +SP R
Sbjct: 914 PPAPLDRGENLYYEIGASEGSPYSGPTRSWSPFRSMPPDRLNASYGMLGQSPPLHRSPDF 973
Query: 116 LLGGPPAPRPRAHSCGGGGGPDAP-----------LGTLCGPRGPGPATPAA-------- 156
LL PPAP G P P + GPRGP PA+ ++
Sbjct: 974 LLSYPPAPSCFPPDHLGYSAPQHPARRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPR 1033
Query: 157 ------PGGPRLPQDALAA-GPRRCRLLRVPDG-----LLSRAL--RAGRSRRLARVRSV 202
P PRLPQ A GPR + P G LL RA GR L R
Sbjct: 1034 SRSDPGPPVPRLPQKQRAPWGPRTPHRVPGPWGPPEPLLLYRAAPPAYGRGGELHRGSLY 1093
Query: 203 SSGNEDEERRAGSESPARAPSSS 225
+G + E AG P PS S
Sbjct: 1094 RNGGQRGE-GAGPPPPYPTPSWS 1115
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 39.3 bits (90), Expect = 0.006
Identities = 49/152 (32%), Positives = 55/152 (36%), Gaps = 27/152 (17%)
Query: 37 PRLPAPCTLESPIRAAAVPRRCAAESDLWPRAADEDAGRTDWDPRSQAALSLPHLP--RV 94
PR PAP P +V R A PR P ++ PH P R
Sbjct: 53 PRRPAPLPARPPGALGSVLRPLRARPGCRPRRPH---------PAARCLPLRPHRPTRRH 103
Query: 95 RTTYGFCALLESPHTR------RKESLLLGGPPAPR-PRAHSCGGGGG------PDAPLG 141
R GF SP R +L L G AP RA GG GG P +P G
Sbjct: 104 RRPGGFPLAWGSPQPAPRPAPGRSSALALAGGAAPGVARAQRPGGSGGRSHPGGPGSPRG 163
Query: 142 TLCGPRGPGPATPAAPGGPRLPQDALAAGPRR 173
G GPG PAA G R PQ + A R
Sbjct: 164 G--GTVGPGDRGPAAADGGR-PQRTVRAAETR 192
Score = 33.1 bits (74), Expect = 0.40
Identities = 39/122 (31%), Positives = 43/122 (35%), Gaps = 17/122 (13%)
Query: 145 GPRGPGPATPAAPGGPRLPQDALAAGPRR-CRLLRVPDGLLSRALRAGRSRRLARVRSVS 203
GPR PG P A GP GPRR L P G L LR R+R R R
Sbjct: 36 GPRTPGGQLPGARRGP---------GPRRPAPLPARPPGALGSVLRPLRARPGCRPRRPH 86
Query: 204 SGNEDEERRAGSESPA-RAPSSSPLSSRAPLPERLEAKGTVALGRAGDALRLAAEYCPGT 262
R + R P PL+ +P P A G AL LA PG
Sbjct: 87 PAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRPAPG------RSSALALAGGAAPGV 140
Query: 263 RR 264
R
Sbjct: 141 AR 142
Score = 30.4 bits (67), Expect = 2.6
Identities = 49/176 (27%), Positives = 57/176 (32%), Gaps = 31/176 (17%)
Query: 17 PKPAFAKVLTPNRIPEFCIP--PRLPAPCTLESPIRAAAVPRRCAAESDLW--PRAADED 72
P A VL P R C P P A C P R RR W P+ A
Sbjct: 63 PPGALGSVLRPLRARPGCRPRRPHPAARCLPLRPHRPTRRHRRPGGFPLAWGSPQPAPRP 122
Query: 73 AGRTDWDPRSQAALSL-----PHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRA 127
A P +AL+L P + R + G H S GG P R
Sbjct: 123 A------PGRSSALALAGGAAPGVARAQRPGGSGG---RSHPGGPGSPRGGGTVGPGDRG 173
Query: 128 HSCGGGGGPD-------------APLGTLCGPRGPGPATPAAPGGPRLPQDALAAG 170
+ GG P AP TL GP TPA GP+ P+D G
Sbjct: 174 PAAADGGRPQRTVRAAETRGAAAAPPLTLEGPVQSHHGTPALTQGPQSPRDGAQLG 229
>gi|110611914 progesterone receptor [Homo sapiens]
Length = 933
Score = 38.9 bits (89), Expect = 0.007
Identities = 67/259 (25%), Positives = 97/259 (37%), Gaps = 42/259 (16%)
Query: 11 AAGSSAPKPAFAKVLTPNRIPEFCIPPRLPAPCTLESPI--RAAAVPRRCAAESDLWPRA 68
A G AP A P C P P P + S +A+P + + L+PR
Sbjct: 6 AKGPRAPHVAGGPPSPEVGSPLLCRPAAGPFPGSQTSDTLPEVSAIP--ISLDGLLFPRP 63
Query: 69 ADEDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAH 128
G+ D ++Q SL + E ++R + + GG + P
Sbjct: 64 CQ---GQDPSDEKTQDQQSLSDV-------------EGAYSRAEATRGAGGSSSSPPEKD 107
Query: 129 SCGGGGGPDAPLGTLCGPRGPGPATPAAPG----------GPRLPQDALAAGPRRCRLLR 178
S G D+ L TL P GPG + P+ P GP LP+D AA + R
Sbjct: 108 S----GLLDSVLDTLLAPSGPGQSQPSPPACEVTSSWCLFGPELPEDPPAAPATQ----R 159
Query: 179 VPDGLLSRA-LRAGRSRRLARVRSVSSGNEDEERR---AGSESPARAPSSSPLSSRAPLP 234
V L+SR+ + G S A V R+ SESP + + S +A
Sbjct: 160 VLSPLMSRSGCKVGDSSGTAAAHKVLPRGLSPARQLLLPASESPHWSGAPVKPSPQAAAV 219
Query: 235 ERLEAKGTVALGRAGDALR 253
E E G+ + AG L+
Sbjct: 220 EVEEEDGSESEESAGPLLK 238
Score = 37.0 bits (84), Expect = 0.028
Identities = 69/250 (27%), Positives = 89/250 (35%), Gaps = 38/250 (15%)
Query: 7 LCSSAAGSSAPKPAFAKV-----LTPNRIPEFCIPPRLPAPCTLESPIRAAAVPRRCAAE 61
L S G S P P +V L +PE PP PA + SP+ + + C
Sbjct: 119 LAPSGPGQSQPSPPACEVTSSWCLFGPELPED--PPAAPATQRVLSPLMSRS---GCKVG 173
Query: 62 SDLWPRAADEDAGRTDWDPRSQAALSLPHLPR-----VRTTYGFCALLESPHTRRKESLL 116
AA + R P Q L P V+ + A +E ES
Sbjct: 174 DSSGTAAAHKVLPR-GLSPARQLLLPASESPHWSGAPVKPSPQ-AAAVEVEEEDGSESEE 231
Query: 117 LGGP---PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLP---QDALAAG 170
GP PR + GGG P G G P + PR+ QDA A
Sbjct: 232 SAGPLLKGKPRALGGAAAGGGAAAVPPGAAAGGVALVPKEDSRFSAPRVALVEQDAPMA- 290
Query: 171 PRRCRL-------LRVPDGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPS 223
P R L + VP L+ AL A R+R+L S G AG+ S P
Sbjct: 291 PGRSPLATTVMDFIHVPILPLNHALLAARTRQLLEDESYDGG-------AGAASAFAPPR 343
Query: 224 SSPLSSRAPL 233
SSP +S P+
Sbjct: 344 SSPCASSTPV 353
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 38.5 bits (88), Expect = 0.010
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 80 PRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGP--PAPR---PRAHSCGGGG 134
PR QA L L P + T ALL S E+ L P PAPR P + G
Sbjct: 17 PRQQAPLGLSAQPALWPTLAALALLSSV----AEASLGSAPRSPAPREGPPPVLASPAGH 72
Query: 135 GPDAPLGTLCGPRG----PGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRA 190
P C R P P+ PA P P P AL G R R G SRA A
Sbjct: 73 LPGGRTARWCSGRARRPPPQPSRPAPP--PPAPPSALPRGGRAAR----AGGPGSRARAA 126
Query: 191 GR-----SRRLARVRSVSSGNEDEER-----RAGSESPARAPSSSPLSS 229
G +L VR++ G+ +E +GS AR+P L+S
Sbjct: 127 GARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLAS 175
Score = 34.3 bits (77), Expect = 0.18
Identities = 43/141 (30%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 10 SAAGSSAPKPAFAKV---LTPNRIPEFCI-----PPRLPAPCTLESPIRAAAVPRRCAAE 61
S A P P A L R +C PP P+ P +A+PR A
Sbjct: 55 SPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAA 114
Query: 62 SDLWPRAADEDAGRTDWDPRSQA----ALSLPH----LPRVRTTYGFCALLESPHTRRKE 113
P + AG RSQ AL L H L R R G C SPH
Sbjct: 115 RAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLA 174
Query: 114 SLLLGG----PPAPRPRAHSC 130
SLL G PP RP + C
Sbjct: 175 SLLGAGALRPPPGSRPVSQPC 195
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 38.5 bits (88), Expect = 0.010
Identities = 54/169 (31%), Positives = 66/169 (39%), Gaps = 29/169 (17%)
Query: 80 PRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGP--PAPR---PRAHSCGGGG 134
PR QA L L P + T ALL S E+ L P PAPR P + G
Sbjct: 17 PRQQAPLGLSAQPALWPTLAALALLSSV----AEASLGSAPRSPAPREGPPPVLASPAGH 72
Query: 135 GPDAPLGTLCGPRG----PGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRALRA 190
P C R P P+ PA P P P AL G R R G SRA A
Sbjct: 73 LPGGRTARWCSGRARRPPPQPSRPAPP--PPAPPSALPRGGRAAR----AGGPGSRARAA 126
Query: 191 GR-----SRRLARVRSVSSGNEDEER-----RAGSESPARAPSSSPLSS 229
G +L VR++ G+ +E +GS AR+P L+S
Sbjct: 127 GARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLAS 175
Score = 34.3 bits (77), Expect = 0.18
Identities = 43/141 (30%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 10 SAAGSSAPKPAFAKV---LTPNRIPEFCI-----PPRLPAPCTLESPIRAAAVPRRCAAE 61
S A P P A L R +C PP P+ P +A+PR A
Sbjct: 55 SPAPREGPPPVLASPAGHLPGGRTARWCSGRARRPPPQPSRPAPPPPAPPSALPRGGRAA 114
Query: 62 SDLWPRAADEDAGRTDWDPRSQA----ALSLPH----LPRVRTTYGFCALLESPHTRRKE 113
P + AG RSQ AL L H L R R G C SPH
Sbjct: 115 RAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFRFCSGSCRRARSPHDLSLA 174
Query: 114 SLLLGG----PPAPRPRAHSC 130
SLL G PP RP + C
Sbjct: 175 SLLGAGALRPPPGSRPVSQPC 195
>gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo
sapiens]
Length = 327
Score = 38.5 bits (88), Expect = 0.010
Identities = 51/197 (25%), Positives = 73/197 (37%), Gaps = 25/197 (12%)
Query: 14 SSAPKPAFAKVLTPNRIPEFCIPPRL---PAPCTLESPIRAAAVPRRCAAESDLWPRAAD 70
++AP P ++ P +P P PC P AA+P R A + PRAA
Sbjct: 36 TTAPPP-LPRIPDPRALPPTLFLPHFLGGDGPCLTPQPRAPAALPNRSLAVAGGTPRAAP 94
Query: 71 EDAGRTDWDPRSQAALSLPHLPRVRTTYGFCALLE---SPHTRRKESLLLGGPPA---PR 124
+ R R+ A LP R LE SP T + + GP A P
Sbjct: 95 KK--RRKKKVRASPAGQLPS--RFHQYQQHRPSLEGGRSPATGPSGAQEVPGPAAALAPS 150
Query: 125 PRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLL 184
P A + G PD P PAAPG L ++ L + + + +P G L
Sbjct: 151 PAAAAGTEGASPDL-----------APLRPAAPGQTPLRKEVLKSKMGKSEKIALPHGQL 199
Query: 185 SRALRAGRSRRLARVRS 201
+ ++ R +S
Sbjct: 200 VHGIHLYEQPKINRQKS 216
>gi|38327539 inositol polyphosphate-5-phosphatase E [Homo sapiens]
Length = 644
Score = 38.5 bits (88), Expect = 0.010
Identities = 47/153 (30%), Positives = 57/153 (37%), Gaps = 27/153 (17%)
Query: 105 ESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDAP--------LGTLCGPRGPGPATPAA 156
+ P R + L G PPA R G PDAP T P G P AA
Sbjct: 16 QPPEGRTLQGQLPGAPPAQR-------AGSPPDAPGSESPALACSTPATPSGEDPPARAA 68
Query: 157 PGGPRLPQDALAAGPRRCRLLRVPD-GLLSRALRAGRSRRLARVRSVSSGNEDEERRAGS 215
P PR P A PR R L + D G R R + AR +G S
Sbjct: 69 PIAPRPP-----ARPRLERALSLDDKGWRRRRFRGSQEDLEAR-----NGTSPSRGSVQS 118
Query: 216 ESP-ARAPSSSPLSSRAPLPERLEAKGTVALGR 247
E P A A S SP L E +++G ++ R
Sbjct: 119 EGPGAPAHSCSPPCLSTSLQEIPKSRGVLSSER 151
>gi|21264339 SRY (sex determining region Y)-box 12 [Homo sapiens]
Length = 315
Score = 38.5 bits (88), Expect = 0.010
Identities = 40/138 (28%), Positives = 49/138 (35%), Gaps = 28/138 (20%)
Query: 118 GGPPAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPR----- 172
G P RPR GGG P GP+ PG A GG P AA P
Sbjct: 117 GAPAKARPRPPGGSGGGSRLKP-----GPQLPGRGGRRAAGG---PLGGGAAAPEDDDED 168
Query: 173 ------RCRLLRVPDGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSP 226
RL+ P L R + AGR+ R G + + E A A ++SP
Sbjct: 169 DDEELLEVRLVETPGRELWRMVPAGRAAR---------GQAERAQGPSGEGAAAAAAASP 219
Query: 227 LSSRAPLPERLEAKGTVA 244
S PE E + A
Sbjct: 220 TPSEDEEPEEEEEEAAAA 237
>gi|239757626 PREDICTED: hypothetical protein XP_002345507 [Homo
sapiens]
Length = 609
Score = 38.1 bits (87), Expect = 0.012
Identities = 37/94 (39%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 96 TTYGFCALLESPHTRRKESLLLGGPPAPRPRA--------HSCGGGGGPD--APLGTLCG 145
T G AL P RR LL P R RA H GG G D A C
Sbjct: 351 TALGAAALGTRPPRRRGLPLLTDAPVPRRVRALVQLQLRLHVLGGEGDADLDATRQAACR 410
Query: 146 PRGPGPATPAAP--GGPRLPQDAL--AAGPRRCR 175
R P P TPA P GP LP+ L A PR+CR
Sbjct: 411 DREPAPETPARPLALGP-LPRPGLRSARPPRQCR 443
Score = 33.1 bits (74), Expect = 0.40
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 40/130 (30%)
Query: 121 PAPRPRAHS------CGGGG--GPDAPLGTLCGPRGPGPA---------TPAAPGGPR-- 161
P PRP S C G GP AP+ + PR PG A +P+APGG +
Sbjct: 427 PLPRPGLRSARPPRQCRGEHRLGPHAPMPS---PRCPGEAQGVTDGRRASPSAPGGDQDR 483
Query: 162 -------LPQDALAAGPRRC--------RLLRVPDGLLSRALRAGRSRRLARVRSVSSGN 206
Q AGP+R R +RVP+G +R +GR R A+ + ++
Sbjct: 484 VSTTPQPTAQPGSGAGPQRPGPTQKRGGRGVRVPEGSPARIAFSGR-RGGAKAQPMAEAE 542
Query: 207 E--DEERRAG 214
D ERR G
Sbjct: 543 SLGDRERRDG 552
Score = 29.3 bits (64), Expect = 5.8
Identities = 42/139 (30%), Positives = 51/139 (36%), Gaps = 18/139 (12%)
Query: 126 RAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLS 185
R S GGGGG D T G G P G P L A PRR R L V L
Sbjct: 338 RTQSPGGGGGQDP---TALGAAALGTRPPRRRGLPLLTD---APVPRRVRAL-VQLQLRL 390
Query: 186 RALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPL---SSRAPLPERLEAKGT 242
L L R + +R E+PAR + PL R+ P R + +G
Sbjct: 391 HVLGGEGDADLDATRQAAC----RDREPAPETPARPLALGPLPRPGLRSARPPR-QCRGE 445
Query: 243 VALGRAGDALRLAAEYCPG 261
R G + + CPG
Sbjct: 446 ---HRLGPHAPMPSPRCPG 461
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 38.1 bits (87), Expect = 0.012
Identities = 52/187 (27%), Positives = 63/187 (33%), Gaps = 23/187 (12%)
Query: 68 AADEDAGRTDWDPRSQAALSLPHLPRVRTTYG-------FCALLESPHTRRKESLLLGGP 120
A E +G D R++ A PH PR R+ G F A+ P + S L
Sbjct: 65 AGTEVSGAPHPDSRTRPAARPPH-PRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAA 123
Query: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP 180
P PRP S P AP PG A G Q + G R R P
Sbjct: 124 PGPRPGCSSARASPAPAAP--QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQP 181
Query: 181 DGLLSRALRAGRSRRLARVR------SVSSGNEDEERRAGS----ESPARAPSSSP---L 227
L R RA R R G+ R G+ P A +SSP
Sbjct: 182 PPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADF 241
Query: 228 SSRAPLP 234
SS +P P
Sbjct: 242 SSDSPQP 248
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 38.1 bits (87), Expect = 0.012
Identities = 52/187 (27%), Positives = 63/187 (33%), Gaps = 23/187 (12%)
Query: 68 AADEDAGRTDWDPRSQAALSLPHLPRVRTTYG-------FCALLESPHTRRKESLLLGGP 120
A E +G D R++ A PH PR R+ G F A+ P + S L
Sbjct: 65 AGTEVSGAPHPDSRTRPAARPPH-PRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAA 123
Query: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP 180
P PRP S P AP PG A G Q + G R R P
Sbjct: 124 PGPRPGCSSARASPAPAAP--QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQP 181
Query: 181 DGLLSRALRAGRSRRLARVR------SVSSGNEDEERRAGS----ESPARAPSSSP---L 227
L R RA R R G+ R G+ P A +SSP
Sbjct: 182 PPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADF 241
Query: 228 SSRAPLP 234
SS +P P
Sbjct: 242 SSDSPQP 248
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 38.1 bits (87), Expect = 0.012
Identities = 52/187 (27%), Positives = 63/187 (33%), Gaps = 23/187 (12%)
Query: 68 AADEDAGRTDWDPRSQAALSLPHLPRVRTTYG-------FCALLESPHTRRKESLLLGGP 120
A E +G D R++ A PH PR R+ G F A+ P + S L
Sbjct: 65 AGTEVSGAPHPDSRTRPAARPPH-PRTRSPPGRSGSGTTFSAVPPRPSQHQSGSRLRPAA 123
Query: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVP 180
P PRP S P AP PG A G Q + G R R P
Sbjct: 124 PGPRPGCSSARASPAPAAP--QAAARTAPGRAASGGSGPGSRGQGSDQVGARPSRAGGQP 181
Query: 181 DGLLSRALRAGRSRRLARVR------SVSSGNEDEERRAGS----ESPARAPSSSP---L 227
L R RA R R G+ R G+ P A +SSP
Sbjct: 182 PPLTCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSGGGPGTAAASSPSADF 241
Query: 228 SSRAPLP 234
SS +P P
Sbjct: 242 SSDSPQP 248
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 38.1 bits (87), Expect = 0.012
Identities = 78/372 (20%), Positives = 128/372 (34%), Gaps = 59/372 (15%)
Query: 21 FAKVLTPNRIPEFCIPPRLPA--PCTLESPIRAAAVPRRCAAESDLWPRAADEDAGRTDW 78
F K + P +P P+ P P E P P R A D R +T
Sbjct: 161 FPKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQ--KTGP 218
Query: 79 DPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDA 138
DP S R YG P R E+ + HS G G +
Sbjct: 219 DPASAPG---------RGNYG------PPVRRASEARMSSSSRDSESWDHSGGAGDSSRS 263
Query: 139 PLG---------------TLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGL 183
P G ++ P P P P PGG R P + + D
Sbjct: 264 PAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPG 323
Query: 184 LSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLP---ERLEAK 240
+ R R+ + +V + + +G S A A + P ++R P P E EA
Sbjct: 324 TTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPPPPEEEEEEAN 383
Query: 241 G-----TVALGRAGDALRLAAEYCPGTRRLRLRLLRAESL----FGGAPGPRAVRCRLSL 291
LG AL + Y L+ +++A+ L G P +L L
Sbjct: 384 SYDSDEATTLG----ALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYV---KLHL 436
Query: 292 VLRPPGTARWQ--CSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGR 349
+ PG ++ + + +R +++ + G+++++++R +R+ DE +
Sbjct: 437 L---PGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDK-FGHNE 492
Query: 350 LLGQGELSLGAL 361
+G+ SL L
Sbjct: 493 FIGETRFSLKKL 504
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 38.1 bits (87), Expect = 0.012
Identities = 78/372 (20%), Positives = 128/372 (34%), Gaps = 59/372 (15%)
Query: 21 FAKVLTPNRIPEFCIPPRLPA--PCTLESPIRAAAVPRRCAAESDLWPRAADEDAGRTDW 78
F K + P +P P+ P P E P P R A D R +T
Sbjct: 157 FPKQVLPQPMPIKKTKPQQPVSEPAAPEQPAPEPKHPARAPARGDSEDRRGPGQ--KTGP 214
Query: 79 DPRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAPRPRAHSCGGGGGPDA 138
DP S R YG P R E+ + HS G G +
Sbjct: 215 DPASAPG---------RGNYG------PPVRRASEARMSSSSRDSESWDHSGGAGDSSRS 259
Query: 139 PLG---------------TLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGL 183
P G ++ P P P P PGG R P + + D
Sbjct: 260 PAGLRRANSVQASRPAPGSVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVAPSDPG 319
Query: 184 LSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLP---ERLEAK 240
+ R R+ + +V + + +G S A A + P ++R P P E EA
Sbjct: 320 TTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQPAAARQPPPPEEEEEEAN 379
Query: 241 G-----TVALGRAGDALRLAAEYCPGTRRLRLRLLRAESL----FGGAPGPRAVRCRLSL 291
LG AL + Y L+ +++A+ L G P +L L
Sbjct: 380 SYDSDEATTLG----ALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYV---KLHL 432
Query: 292 VLRPPGTARWQ--CSAVVGRSRKASFDQDFCFDGLSEDEVRRLAVRVKARDEGRGRDRGR 349
+ PG ++ + + +R +++ + G+++++++R +R+ DE +
Sbjct: 433 L---PGASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDK-FGHNE 488
Query: 350 LLGQGELSLGAL 361
+G+ SL L
Sbjct: 489 FIGETRFSLKKL 500
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.7 bits (86), Expect = 0.016
Identities = 56/187 (29%), Positives = 70/187 (37%), Gaps = 33/187 (17%)
Query: 121 PAPRPRAHSCGGGGGPDAPLGTLCGPRGP-GPATPAAPGGP---RLPQDALAAGPRRCRL 176
PA P A G GP P G G RG GPA PA P GP R P A GPR +
Sbjct: 1041 PAGPPGAPGAPGAPGPVGPAGK-SGDRGETGPAGPAGPVGPVGARGP--AGPQGPRGDKG 1097
Query: 177 LRVPDGLLSRALRAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAP---- 232
G R ++ R + G+ E+ +G+ PA P P S+ AP
Sbjct: 1098 ETGEQG--DRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPA-GPRGPPGSAGAPGKDG 1154
Query: 233 ---LPERLEAKGTVALGRAGDALRLAAEYCPGTRRLRLRLLRAESLFGGAPGPRAVRCRL 289
LP + G GR GDA + PG G PGP +
Sbjct: 1155 LNGLPGPIGPPG--PRGRTGDAGPVGPPGPPGP--------------PGPPGPPSAGFDF 1198
Query: 290 SLVLRPP 296
S + +PP
Sbjct: 1199 SFLPQPP 1205
Score = 30.4 bits (67), Expect = 2.6
Identities = 21/49 (42%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 119 GPPAPRPRAHSCGGGGGP-------DAPLGTLCGPRGPGPATPAAPGGP 160
GPP P A G G P DA GP PGPA PA P GP
Sbjct: 806 GPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGP--PGPAGPAGPPGP 852
Score = 30.4 bits (67), Expect = 2.6
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 12/62 (19%)
Query: 119 GPPAPRPRAHSCGGGGGPDAPLGTLCGPRGPGPATPAAPGG-----PRLPQDALAAGPRR 173
GPP PR R G G P P GP PGP P + G P+ PQ+ G R
Sbjct: 1163 GPPGPRGRTGDAGPVGPPGPP-----GP--PGPPGPPSAGFDFSFLPQPPQEKAHDGGRY 1215
Query: 174 CR 175
R
Sbjct: 1216 YR 1217
Score = 30.0 bits (66), Expect = 3.4
Identities = 44/166 (26%), Positives = 55/166 (33%), Gaps = 27/166 (16%)
Query: 129 SCGGGGGPDAPLGTLCGPRGPGPATPAAPGGPRLPQDALAAGPRRCRLLRVPDGLLSRAL 188
S G GP P G P PGP G P P + A+GP R P G
Sbjct: 176 SVPGPMGPSGPRGLPGPPGAPGP--QGFQGPPGEPGEPGASGPMGPRGPPGPPG------ 227
Query: 189 RAGRSRRLARVRSVSSGNEDEERRAGSESPARAPSSSPLSSRAPLPERLEAKGTVAL-GR 247
++ G + R G P + L A LP +G L G
Sbjct: 228 -----------KNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGA 276
Query: 248 AGDALRLAAEYCPGT-------RRLRLRLLRAESLFGGAPGPRAVR 286
GDA + PG+ ++ R L E GAPGP R
Sbjct: 277 KGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Score = 29.6 bits (65), Expect = 4.4
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 119 GPPAPR--------PRAHSCGGGGGPDAPLGTLCGPRG-------PGPATPAAPGG 159
GPP P P A G GP P G+ GP+G PGPA A P G
Sbjct: 332 GPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSE-GPQGVRGEPGPPGPAGAAGPAG 386
Score = 28.9 bits (63), Expect = 7.6
Identities = 21/47 (44%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 119 GPPAPRPRAHSCGGGGGPDAPLGTLCGPRGP-GPATPAAPGGPRLPQ 164
GP PR A G G P P L GP GP GP P GG PQ
Sbjct: 118 GPRGPRGPAGPPGRDGIPGQP--GLPGPPGPPGPPGPPGLGGNFAPQ 162
Score = 28.9 bits (63), Expect = 7.6
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 6/94 (6%)
Query: 80 PRSQAALSLPHLPRVRTTYGFCALLESPHTRRKESLLLGGPPAP-RPRAHSCGGGGGPDA 138
P SQ A L +P R G L P R ++ G +P + G GP
Sbjct: 718 PGSQGAPGLQGMPGERGAAG----LPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPG 773
Query: 139 PLGTLCGPRGPGPATPAAPGGPR-LPQDALAAGP 171
P G GP+ PA P G R P D GP
Sbjct: 774 PAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGP 807
Score = 28.9 bits (63), Expect = 7.6
Identities = 20/47 (42%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 119 GPPAPR--PRAHSCGGGGGPDAPLGTLCGP--RG-PGPATPAAPGGP 160
GPP P P G GP P G P RG PGP PA GP
Sbjct: 770 GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGP 816
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.137 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,388,347
Number of Sequences: 37866
Number of extensions: 1176266
Number of successful extensions: 9727
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 711
Number of HSP's that attempted gapping in prelim test: 7604
Number of HSP's gapped (non-prelim): 2564
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.