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Search of human proteins with 156938331
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
(669 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo s... 1384 0.0
gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo... 67 5e-11
gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo sapi... 52 2e-06
gi|7661952 squamous cell carcinoma antigen recognized by T cells... 44 4e-04
gi|124256489 crooked neck-like 1 protein [Homo sapiens] 44 4e-04
gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Hom... 41 0.003
gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa p... 41 0.004
gi|237858619 polyamine modulated factor 1 binding protein 1 isof... 40 0.005
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 40 0.005
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 40 0.005
gi|237858621 polyamine modulated factor 1 binding protein 1 isof... 38 0.026
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 38 0.026
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 38 0.026
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 38 0.026
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 38 0.026
gi|55770906 XPA binding protein 2 [Homo sapiens] 38 0.026
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens] 38 0.035
gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens] 37 0.045
gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens] 37 0.045
gi|110815815 centlein isoform 1 [Homo sapiens] 35 0.17
gi|32567786 keratin 6L [Homo sapiens] 35 0.22
gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens] 35 0.22
gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo... 35 0.29
gi|38045919 huntingtin interacting protein 1 [Homo sapiens] 35 0.29
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr... 34 0.38
gi|59850762 uveal autoantigen with coiled-coil domains and ankyr... 34 0.38
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 34 0.38
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 34 0.38
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 34 0.38
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 34 0.38
>gi|156938331 PRP39 pre-mRNA processing factor 39 homolog [Homo
sapiens]
Length = 669
Score = 1384 bits (3583), Expect = 0.0
Identities = 669/669 (100%), Positives = 669/669 (100%)
Query: 1 MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEM 60
MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEM
Sbjct: 1 MQNSHMDEYRNSSNGSTGNSSEVVVEHPTDFSTEIMNVTEMEQSPDDSPNVNASTEETEM 60
Query: 61 ASAVDLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDR 120
ASAVDLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDR
Sbjct: 61 ASAVDLPVTLTETEANFPPEYEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDR 120
Query: 121 FFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPG 180
FFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPG
Sbjct: 121 FFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPG 180
Query: 181 DPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLY 240
DPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLY
Sbjct: 181 DPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRILGIPTQLY 240
Query: 241 SHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPA 300
SHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPA
Sbjct: 241 SHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPA 300
Query: 301 KLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYL 360
KLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYL
Sbjct: 301 KLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYL 360
Query: 361 EFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKK 420
EFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKK
Sbjct: 361 EFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTIHLPKK 420
Query: 421 PMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQD 480
PMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQD
Sbjct: 421 PMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQD 480
Query: 481 AIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG 540
AIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG
Sbjct: 481 AIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG 540
Query: 541 DLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKE 600
DLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKE
Sbjct: 541 DLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKE 600
Query: 601 QDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPWNY 660
QDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPWNY
Sbjct: 601 QDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVYNYSAWYQYNYQNPWNY 660
Query: 661 GQYYPPPPT 669
GQYYPPPPT
Sbjct: 661 GQYYPPPPT 669
>gi|4557495 cleavage stimulation factor subunit 3 isoform 1 [Homo
sapiens]
Length = 717
Score = 67.0 bits (162), Expect = 5e-11
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 4/146 (2%)
Query: 71 TETEANFPPE-YEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCY 129
TE A + PE +K K +E NP D W L++ Q + ARK ++R +P
Sbjct: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREA-QNQPIDKARKTYERLVAQFPSSG 65
Query: 130 GYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIR 189
+WK Y + E + N +++++R L + L +DLW Y+++++ET P +
Sbjct: 66 RFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-LHIDLWKCYLSYVRETKGK-LPSYKEKMA 123
Query: 190 GTFEHAVLAAGTDFRSDRLWEMYINW 215
++ A+ G + S ++W YIN+
Sbjct: 124 QAYDFALDKIGMEIMSYQIWVDYINF 149
Score = 43.9 bits (102), Expect = 5e-04
Identities = 56/290 (19%), Positives = 116/290 (40%), Gaps = 38/290 (13%)
Query: 347 PLEKAQLKNWKEYLEFEIENGTH--------ERVVVLFERCVISCALYEEFWIKYAKYME 398
P E Q+ WK+Y+++E N +RV+ +E+C++ + + W + A+Y+E
Sbjct: 243 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE 302
Query: 399 NHS---------------IEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQ---GNINEA 440
S + +++ RA + L K +++ +A +EE + ++
Sbjct: 303 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 362
Query: 441 RNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLAR 500
N L E+ + +V ++ + RR ++ + + A ++ ++ + A +
Sbjct: 363 YNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDTRTRHHVYVTAALMEY 420
Query: 501 HLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAV--H 558
+ K + K ++ L+ E Y++ L NE+N + V
Sbjct: 421 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS-------HLNEDNNTRVLFERVLTS 473
Query: 559 GSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKA 608
GSLP + R + F + G D+ +L T KE+ K A
Sbjct: 474 GSLPPEKSGEIWARFLAFESNIG-DLASILKVEKRRFTAFKEEYEGKETA 522
Score = 35.8 bits (81), Expect = 0.13
Identities = 39/207 (18%), Positives = 85/207 (41%), Gaps = 14/207 (6%)
Query: 356 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYME--NHSIEGVRHVFSRAC 413
WK Y+E EI+ +++V LF+RC++ L+ + W Y Y+ + + ++A
Sbjct: 68 WKLYIEAEIKAKNYDKVEKLFQRCLMK-VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAY 126
Query: 414 TIHLPK---KPMVHMLWAAF------EEQQGNINEARNILKTFEECVLGLAMVRLRRVSL 464
L K + M + +W + E G+ E + I G + L
Sbjct: 127 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 186
Query: 465 ERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSR-KVLLEAIERD 523
R + EE + + A K + + A ++A+ + K L ++ V + ++
Sbjct: 187 WRDYNKYEEGIN-IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 245
Query: 524 KENTKLYLNLLEMEYSGDLKQNEENIL 550
+ ++ ++ E S L+ ++ ++
Sbjct: 246 AQQVDMWKKYIQWEKSNPLRTEDQTLI 272
>gi|40807485 PRP6 pre-mRNA processing factor 6 homolog [Homo
sapiens]
Length = 941
Score = 52.0 bits (123), Expect = 2e-06
Identities = 89/438 (20%), Positives = 158/438 (36%), Gaps = 63/438 (14%)
Query: 102 LQYVEQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPL 161
++ E E + A ++ + H P WK +LE+ D + + R ++ P
Sbjct: 377 IRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPT 432
Query: 162 SVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGN 221
SV+LW+ ET R A TD +W E GN
Sbjct: 433 SVELWLALARL----------ETYENARKVLNKARENIPTD---RHIWITAAKLEEANGN 479
Query: 222 LREVTAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGD 281
+ V I DR + T L ++ + + EQ+IQ E +
Sbjct: 480 TQMVEKIIDRAI---TSLRANGVE--------------INREQWIQDAEECDRAGSVATC 522
Query: 282 DGPPGDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRP 341
+ GIE+ E+ +H +E +N E ++ I
Sbjct: 523 QAVMRAVIGIGIEE-----------EDRKHTWMEDADSCVAHNALECAR------AIYAY 565
Query: 342 YFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAK-YMENH 400
V P +K+ W FE +GT E + L +R V C E W+ AK
Sbjct: 566 ALQVFPSKKSV---WLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAG 622
Query: 401 SIEGVRHVFSRACTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLR 460
+ R + + A + P + + E + AR +L A V ++
Sbjct: 623 DVPAARSILALAFQAN-PNSEEIWLAAVKLESENDEYERARRLLAKARSSA-PTARVFMK 680
Query: 461 RVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKN-LPKSRKVLLEA 519
V LE N+ A+ L ++A+++ + F + + + + QK + K+R+ +
Sbjct: 681 SVKLEWVQDNIRAAQDLCEEALRHYE-----DFPKLWMMKGQIEEQKEMMEKAREAYNQG 735
Query: 520 IERDKENTKLYLNLLEME 537
+++ +T L+L L +E
Sbjct: 736 LKKCPHSTPLWLLLSRLE 753
Score = 32.7 bits (73), Expect = 1.1
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 457 VRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVL 516
V LR E+ HG E E LLQ A+ + K + ++P +R +L
Sbjct: 576 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK----WLAGDVPAARSIL 631
Query: 517 LEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEF 576
A + + + +++L +++E D + +L S P R+ K+E+
Sbjct: 632 ALAFQANPNSEEIWLAAVKLESENDEYERARRLL----AKARSSAP-TARVFMKSVKLEW 686
Query: 577 LED---FGSDV-NKLLNAYDEHQTL------LKEQDSLKRKAENGSEEPEEKKAHT 622
++D D+ + L Y++ L ++EQ + KA + +K H+
Sbjct: 687 VQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHS 742
>gi|7661952 squamous cell carcinoma antigen recognized by T cells 3
[Homo sapiens]
Length = 963
Score = 44.3 bits (103), Expect = 4e-04
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 322 NYNE--HEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERVVVLFERC 379
NYN+ ++ K +EE + + E +L ++ Y++FE++ G R+ ++FER
Sbjct: 284 NYNKALQQLEKYKPYEEALLQA-------EAPRLAEYQAYIDFEMKIGDPARIQLIFERA 336
Query: 380 VISCALYEEFWIKYAKYME 398
++ L + WI+Y++Y++
Sbjct: 337 LVENCLVPDLWIRYSQYLD 355
>gi|124256489 crooked neck-like 1 protein [Homo sapiens]
Length = 848
Score = 44.3 bits (103), Expect = 4e-04
Identities = 95/486 (19%), Positives = 177/486 (36%), Gaps = 99/486 (20%)
Query: 94 DFTGWVYLLQYVEQE------NHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKP 147
D+ L+Y E E NH AR +DR P +W KY +E+ N+
Sbjct: 272 DYRNITLWLKYAEMEMKNRQVNH---ARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAG 328
Query: 148 SDEVYRRGLQAIPLSVDLWIHYINF------------LKETLDPGDPETNNTI------- 188
+ +V+ R ++ P W YINF + E P+ N I
Sbjct: 329 ARQVFERWMEWQP-EEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEE 387
Query: 189 --------RGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIY----DRILGIP 236
R +E AV G + + L+ + +E Q V IY DRI
Sbjct: 388 KHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQD 447
Query: 237 TQ-LYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDG------PPGDDL 289
Q L+ ++ K+ D++ ++ Q E+ N H+ D D
Sbjct: 448 AQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEV-KANPHNYDAWFDYLRLVESDAE 506
Query: 290 PSGIEDITDPA-KLITEIENMRH-----------------------RIIEIHQ---EMFN 322
+ ++ + A + I+ RH R +++Q E+
Sbjct: 507 AEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQASLELIP 566
Query: 323 YNEHEVSKRWTFEEGIKRPYFHVKPLEKA---------QLKNWKEYLEFEIENGTHERVV 373
+ + +K W + ++ +A + K +K Y+E E++ +R
Sbjct: 567 HKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLREFDRCR 626
Query: 374 VLFERCVISCALYEEFWIKYAKYMEN--HSIEGVRHVFSRACTIHLPKKPMVHMLWAAF- 430
L+E+ + WIK+A+ +E I+ R ++ A I P+ M +LW ++
Sbjct: 627 KLYEKFLEFGPENCTSWIKFAE-LETILGDIDRARAIYELA--ISQPRLDMPEVLWKSYI 683
Query: 431 ------EEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKN 484
EE + N R +L+ + + ++ + S + G+L + + ++A K
Sbjct: 684 DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS--GKEGSLTKCRQIYEEANKT 741
Query: 485 AKSNNE 490
++ E
Sbjct: 742 MRNCEE 747
Score = 41.2 bits (95), Expect = 0.003
Identities = 55/261 (21%), Positives = 106/261 (40%), Gaps = 40/261 (15%)
Query: 324 NEHEVSKRWTFEEGIKRP--------------------------YFHVKPLEKAQLKNWK 357
N++++ KR TFE+ I++ Y ++ + W
Sbjct: 221 NDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWL 280
Query: 358 EYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMEN--HSIEGVRHVFSRACTI 415
+Y E E++N +++R + + +FW KY YME ++ G R VF R
Sbjct: 281 KYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT-YMEEMLGNVAGARQVFERWMEW 339
Query: 416 HLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVR--LRRVSLERRHGNLEE 473
P++ H + FE + ++ AR I +E VL V+ ++ E +H
Sbjct: 340 Q-PEEQAWHS-YINFELRYKEVDRARTI---YERFVLVHPDVKNWIKYARFEEKHAYFAH 394
Query: 474 AEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIER--DKENTKLYL 531
A + + A++ + V A+ + QK + R + A++R ++ +L+
Sbjct: 395 ARKVYERAVEFFGDEHMDEHLYVAFAK-FEENQKEFERVRVIYKYALDRISKQDAQELFK 453
Query: 532 NLLEMEYS-GDLKQNEENILN 551
N E GD + E+ I++
Sbjct: 454 NYTIFEKKFGDRRGIEDIIVS 474
Score = 38.5 bits (88), Expect = 0.020
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 356 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEG----VRHVFSR 411
WK Y++FEIE ER L+ R ++ + + WI +A++ + EG R ++
Sbjct: 679 WKSYIDFEIEQEETERTRNLYRR-LLQRTQHVKVWISFAQFELSSGKEGSLTKCRQIYEE 737
Query: 412 A------CTIHLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECV 451
A C ++ M+ W +FEE+ G ++ + K E V
Sbjct: 738 ANKTMRNCE-EKEERLMLLESWRSFEEEFGTASDKERVDKLMPEKV 782
Score = 35.0 bits (79), Expect = 0.22
Identities = 89/463 (19%), Positives = 168/463 (36%), Gaps = 62/463 (13%)
Query: 106 EQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDL 165
E ++ + RK F+ W KYA E+ I+ + +Y R L ++ L
Sbjct: 219 ELNDYKLRKRKTFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITL 278
Query: 166 WIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREV 225
W+ Y ++ + + N+ R ++ A+ T R ++ W Y E GN+
Sbjct: 279 WLKYAE-----MEMKNRQVNHA-RNIWDRAIT---TLPRVNQFWYKYTYMEEMLGNVAGA 329
Query: 226 TAIYDRILGIPTQLYSHHFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPP 285
+++R + + + H E + R E+F+ + ++ + ++
Sbjct: 330 RQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYA------ 383
Query: 286 GDDLPSGIEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHV 345
+ + R +E + + +EH FEE ++ + V
Sbjct: 384 ---------RFEEKHAYFAHARKVYERAVEFFGDE-HMDEHLYVAFAKFEEN-QKEFERV 432
Query: 346 KPLEKAQLKN---------WKEYLEFEIENGTH---ERVVV-----LFERCVISCALYEE 388
+ + K L +K Y FE + G E ++V +E V + +
Sbjct: 433 RVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYD 492
Query: 389 FWIKYAKYMENHS-IEGVRHVFSRACTIHLPKKPMVH-----MLW---AAFEEQQGNINE 439
W Y + +E+ + E VR V+ RA P + H LW A +EE + E
Sbjct: 493 AWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPE 552
Query: 440 -ARNILKTFEECV----LGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFY 494
R + + E + A + + E R NL A L +I N Y
Sbjct: 553 RTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVY 612
Query: 495 AVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEME 537
++L L + + RK+ + +E EN ++ E+E
Sbjct: 613 -IELELQL----REFDRCRKLYEKFLEFGPENCTSWIKFAELE 650
Score = 32.0 bits (71), Expect = 1.9
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 81 YEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYC---YGYWKKYAD 137
YEKF +E P++ T W+ + + AR ++ I P WK Y D
Sbjct: 629 YEKF---LEFGPENCTSWIKFAELETILGDIDRARAIYE-LAISQPRLDMPEVLWKSYID 684
Query: 138 LEKRHDNIKPSDEVYRRGLQAIPLSVDLWIHYINF 172
E + + + +YRR LQ V +WI + F
Sbjct: 685 FEIEQEETERTRNLYRRLLQRTQ-HVKVWISFAQF 718
>gi|75709187 cleavage stimulation factor subunit 3 isoform 2 [Homo
sapiens]
Length = 103
Score = 41.2 bits (95), Expect = 0.003
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 71 TETEANFPPE-YEKFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCY 129
TE A + PE +K K +E NP D W L++ Q + ARK ++R +P
Sbjct: 7 TEQAAEYVPEKVKKAEKKLEENPYDLDAWSILIREA-QNQPIDKARKTYERLVAQFPSSG 65
Query: 130 GYWKKYADLE 139
+WK Y + E
Sbjct: 66 RFWKLYIEAE 75
>gi|169172639 PREDICTED: similar to U5 snRNP-associated 102 kDa
protein [Homo sapiens]
Length = 406
Score = 40.8 bits (94), Expect = 0.004
Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 9/184 (4%)
Query: 356 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAK-YMENHSIEGVRHVFSRACT 414
W FE +GT E + L +R V C E W+ AK + R + + A
Sbjct: 42 WLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQ 101
Query: 415 IHLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEA 474
+ P + + E + AR +L A V ++ V LE N+ A
Sbjct: 102 AN-PNSEEIWLAAVKLESENDEYERARRLLAKARSSA-PTARVFMKSVKLEWVQDNIRAA 159
Query: 475 EHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKN-LPKSRKVLLEAIERDKENTKLYLNL 533
+ L ++A+++ + F + + + + QK + K+R+ + +++ +T L+L L
Sbjct: 160 QDLCEEALRHYE-----DFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLL 214
Query: 534 LEME 537
+E
Sbjct: 215 SRLE 218
Score = 32.7 bits (73), Expect = 1.1
Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 19/176 (10%)
Query: 457 VRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVL 516
V LR E+ HG E E LLQ A+ + K + ++P +R +L
Sbjct: 41 VWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK----WLAGDVPAARSIL 96
Query: 517 LEAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEF 576
A + + + +++L +++E D + +L S P R+ K+E+
Sbjct: 97 ALAFQANPNSEEIWLAAVKLESENDEYERARRLL----AKARSSAP-TARVFMKSVKLEW 151
Query: 577 LED---FGSDV-NKLLNAYDEHQTL------LKEQDSLKRKAENGSEEPEEKKAHT 622
++D D+ + L Y++ L ++EQ + KA + +K H+
Sbjct: 152 VQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHS 207
Score = 32.0 bits (71), Expect = 1.9
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 108 ENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEVYRRGLQAIPLSVDLWI 167
++++ AA+ + HY W +E++ + ++ + E Y +GL+ P S LW+
Sbjct: 153 QDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWL 212
>gi|237858619 polyamine modulated factor 1 binding protein 1 isoform
a [Homo sapiens]
Length = 1007
Score = 40.4 bits (93), Expect = 0.005
Identities = 70/332 (21%), Positives = 134/332 (40%), Gaps = 41/332 (12%)
Query: 313 IIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEFEIENGTHERV 372
+I +EM N+NE+ K +E + + LE++ L +++ + + N
Sbjct: 139 VILYEEEMGNHNENTGEKLHLAQEQLALAGDKIASLERS-LNLYRDKYQSSLSN------ 191
Query: 373 VVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTI--HLPKKPMVHMLWAAF 430
+ L E C + L E + EN +++ C I H + + +W
Sbjct: 192 IELLE-CQVKM-LQGELGGIMGQEPENKGDHSKVRIYTSPCMIQEHQETQKRLSEVWQKV 249
Query: 431 EEQQGNINEARNILKTFEECVLGL--AMVRLRR--VSLERRH----GNLEEAEHLLQDAI 482
+Q I E RN L VL A+++L+ S H + EE E + + +
Sbjct: 250 SQQDDLIQELRNKLACSNALVLEREKALIKLQADFASCTATHRYPPSSSEECEDI-KKIL 308
Query: 483 KNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG-- 540
K+ + +S H+ + Q NL K +V LEA+ K N + LE++ G
Sbjct: 309 KHLQEQKDSQ------CLHVEEYQ-NLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLR 361
Query: 541 -------DLKQNEENILNCFDKAVHGSLPIKMRIT-----FSQRKVEFLEDFGSDVNKLL 588
+ K + IL C + + ++T F Q K E L++ + ++
Sbjct: 362 EETSAHIERKDKDITILQCRLQELQLEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQ 421
Query: 589 NAYDEHQTLLKEQDSLKRKAENGSEEPEEKKA 620
N+ + + L++Q + + E +E ++ K+
Sbjct: 422 NSLLKKEKELEKQQCMATELEMTVKEAKQDKS 453
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 40.4 bits (93), Expect = 0.005
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 33/182 (18%)
Query: 461 RVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAI 520
R S E +E E + +K + E F + RH + Q + K + ++
Sbjct: 168 RQSFEAWQEKQKELEDKEKQTLKAQRDREEKQFQEEEEKRHCWMKQFKVEKKKLENIQKQ 227
Query: 521 ERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDF 580
E+DK N +LY E + KQ+EE I N + + + + F +
Sbjct: 228 EQDKMNDELYKE--EKIWKEKFKQHEEYIRN-------------LHLQMEEERTRFKDQQ 272
Query: 581 GSDVNKLLN-----------------AYDEHQTLLKEQ-DSLKRKAENGSEEPEEKKAHT 622
+ N LL AY ++ ++KEQ +S KRKA+ E+ + +
Sbjct: 273 EKEKNSLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEWKEKEAKIRQKE 332
Query: 623 ED 624
E+
Sbjct: 333 EE 334
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 40.4 bits (93), Expect = 0.005
Identities = 41/182 (22%), Positives = 71/182 (39%), Gaps = 33/182 (18%)
Query: 461 RVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAI 520
R S E +E E + +K + E F + RH + Q + K + ++
Sbjct: 168 RQSFEAWQEKQKELEDKEKQTLKAQRDREEKQFQEEEEKRHCWMKQFKVEKKKLENIQKQ 227
Query: 521 ERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDF 580
E+DK N +LY E + KQ+EE I N + + + + F +
Sbjct: 228 EQDKMNDELYKE--EKIWKEKFKQHEEYIRN-------------LHLQMEEERTRFKDQQ 272
Query: 581 GSDVNKLLN-----------------AYDEHQTLLKEQ-DSLKRKAENGSEEPEEKKAHT 622
+ N LL AY ++ ++KEQ +S KRKA+ E+ + +
Sbjct: 273 EKEKNSLLKQQNNAAVKIQAKYKAFVAYQKYGPIIKEQIESKKRKAQEWKEKEAKIRQKE 332
Query: 623 ED 624
E+
Sbjct: 333 EE 334
>gi|237858621 polyamine modulated factor 1 binding protein 1 isoform
b [Homo sapiens]
Length = 882
Score = 38.1 bits (87), Expect = 0.026
Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 32/247 (12%)
Query: 398 ENHSIEGVRHVFSRACTI--HLPKKPMVHMLWAAFEEQQGNINEARNILKTFEECVLGL- 454
EN +++ C I H + + +W +Q I E RN L VL
Sbjct: 70 ENKGDHSKVRIYTSPCMIQEHQETQKRLSEVWQKVSQQDDLIQELRNKLACSNALVLERE 129
Query: 455 -AMVRLRR--VSLERRH----GNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQK 507
A+++L+ S H + EE E + + +K+ + +S H+ + Q
Sbjct: 130 KALIKLQADFASCTATHRYPPSSSEECEDI-KKILKHLQEQKDSQ------CLHVEEYQ- 181
Query: 508 NLPKSRKVLLEAIERDKENTKLYLNLLEMEYSG---------DLKQNEENILNCFDKAVH 558
NL K +V LEA+ K N + LE++ G + K + IL C + +
Sbjct: 182 NLVKDLRVELEAVSEQKRNIMKDMMKLELDLHGLREETSAHIERKDKDITILQCRLQELQ 241
Query: 559 GSLPIKMRIT-----FSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSE 613
++T F Q K E L++ + ++ N+ + + L++Q + + E +
Sbjct: 242 LEFTETQKLTLKKDKFLQEKDEMLQELEKKLTQVQNSLLKKEKELEKQQCMATELEMTVK 301
Query: 614 EPEEKKA 620
E ++ K+
Sbjct: 302 EAKQDKS 308
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 38.1 bits (87), Expect = 0.026
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 465 ERRHGNLEEAEHLLQDAIKNAKSN-NESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERD 523
ER L + H LQ+ +++ NE+ A+KLA+ + + L ++++L E R
Sbjct: 1272 ERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEE-TRQ 1330
Query: 524 KENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSD 583
K N L LE E + Q +E + + H S + ++++ S++K L+DF S
Sbjct: 1331 KLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLERHIS-TLNIQLSDSKKK---LQDFAST 1386
Query: 584 VNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKA 620
V + L + + +++ EN +++ EEK A
Sbjct: 1387 V----------EALEEGKKRFQKEIENLTQQYEEKAA 1413
Score = 33.9 bits (76), Expect = 0.50
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 464 LERRHGNLEEAEHLLQDAIK-NAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIER 522
LE++H L E ++LLQ+ ++ + E+ V+LA ++++ L + L E +R
Sbjct: 878 LEQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDR 937
Query: 523 DK----ENTKLYLNLLEME-------------------YSGDLKQNEENILNCFDKAVHG 559
+ E K+ +L++E +K+ E+ IL D+
Sbjct: 938 GQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKL 997
Query: 560 SLPIKM---RITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPE 616
S K+ RI+ + E+ ++ KL N +H++++ E + +K E +E E
Sbjct: 998 SKERKLLEERISDLTTNLAEEEEKAKNLTKLKN---KHESMISELEVRLKKEEKSRQELE 1054
Query: 617 EKKAHTEDTTSSSTQMIDGDLQANQA 642
+ K E S + I DLQA A
Sbjct: 1055 KLKRKLEGDASDFHEQI-ADLQAQIA 1079
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 38.1 bits (87), Expect = 0.026
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 465 ERRHGNLEEAEHLLQDAIKNAKSN-NESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERD 523
ER L + H LQ+ +++ NE+ A+KLA+ + + L ++++L E R
Sbjct: 1279 ERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEE-TRQ 1337
Query: 524 KENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSD 583
K N L LE E + Q +E + + H S + ++++ S++K L+DF S
Sbjct: 1338 KLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLERHIS-TLNIQLSDSKKK---LQDFAST 1393
Query: 584 VNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKA 620
V + L + + +++ EN +++ EEK A
Sbjct: 1394 V----------EALEEGKKRFQKEIENLTQQYEEKAA 1420
Score = 33.9 bits (76), Expect = 0.50
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 464 LERRHGNLEEAEHLLQDAIK-NAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIER 522
LE++H L E ++LLQ+ ++ + E+ V+LA ++++ L + L E +R
Sbjct: 885 LEQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDR 944
Query: 523 DK----ENTKLYLNLLEME-------------------YSGDLKQNEENILNCFDKAVHG 559
+ E K+ +L++E +K+ E+ IL D+
Sbjct: 945 GQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKL 1004
Query: 560 SLPIKM---RITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPE 616
S K+ RI+ + E+ ++ KL N +H++++ E + +K E +E E
Sbjct: 1005 SKERKLLEERISDLTTNLAEEEEKAKNLTKLKN---KHESMISELEVRLKKEEKSRQELE 1061
Query: 617 EKKAHTEDTTSSSTQMIDGDLQANQA 642
+ K E S + I DLQA A
Sbjct: 1062 KLKRKLEGDASDFHEQI-ADLQAQIA 1086
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 38.1 bits (87), Expect = 0.026
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 465 ERRHGNLEEAEHLLQDAIKNAKSN-NESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERD 523
ER L + H LQ+ +++ NE+ A+KLA+ + + L ++++L E R
Sbjct: 1279 ERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEE-TRQ 1337
Query: 524 KENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSD 583
K N L LE E + Q +E + + H S + ++++ S++K L+DF S
Sbjct: 1338 KLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLERHIS-TLNIQLSDSKKK---LQDFAST 1393
Query: 584 VNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKA 620
V + L + + +++ EN +++ EEK A
Sbjct: 1394 V----------EALEEGKKRFQKEIENLTQQYEEKAA 1420
Score = 33.9 bits (76), Expect = 0.50
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 464 LERRHGNLEEAEHLLQDAIK-NAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIER 522
LE++H L E ++LLQ+ ++ + E+ V+LA ++++ L + L E +R
Sbjct: 885 LEQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDR 944
Query: 523 DK----ENTKLYLNLLEME-------------------YSGDLKQNEENILNCFDKAVHG 559
+ E K+ +L++E +K+ E+ IL D+
Sbjct: 945 GQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKL 1004
Query: 560 SLPIKM---RITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPE 616
S K+ RI+ + E+ ++ KL N +H++++ E + +K E +E E
Sbjct: 1005 SKERKLLEERISDLTTNLAEEEEKAKNLTKLKN---KHESMISELEVRLKKEEKSRQELE 1061
Query: 617 EKKAHTEDTTSSSTQMIDGDLQANQA 642
+ K E S + I DLQA A
Sbjct: 1062 KLKRKLEGDASDFHEQI-ADLQAQIA 1086
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 38.1 bits (87), Expect = 0.026
Identities = 40/157 (25%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 465 ERRHGNLEEAEHLLQDAIKNAKSN-NESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERD 523
ER L + H LQ+ +++ NE+ A+KLA+ + + L ++++L E R
Sbjct: 1272 ERARAELNDKVHKLQNEVESVTGMLNEAEGKAIKLAKDVASLSSQLQDTQELLQEE-TRQ 1330
Query: 524 KENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVEFLEDFGSD 583
K N L LE E + Q +E + + H S + ++++ S++K L+DF S
Sbjct: 1331 KLNVSTKLRQLEEERNSLQDQLDEEMEAKQNLERHIS-TLNIQLSDSKKK---LQDFAST 1386
Query: 584 VNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKA 620
V + L + + +++ EN +++ EEK A
Sbjct: 1387 V----------EALEEGKKRFQKEIENLTQQYEEKAA 1413
Score = 33.9 bits (76), Expect = 0.50
Identities = 48/206 (23%), Positives = 89/206 (43%), Gaps = 31/206 (15%)
Query: 464 LERRHGNLEEAEHLLQDAIK-NAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIER 522
LE++H L E ++LLQ+ ++ + E+ V+LA ++++ L + L E +R
Sbjct: 878 LEQKHSQLTEEKNLLQEQLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARLEEEEDR 937
Query: 523 DK----ENTKLYLNLLEME-------------------YSGDLKQNEENILNCFDKAVHG 559
+ E K+ +L++E +K+ E+ IL D+
Sbjct: 938 GQQLQAERKKMAQQMLDLEEQLEEEEAARQKLQLEKVTAEAKIKKLEDEILVMDDQNNKL 997
Query: 560 SLPIKM---RITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPE 616
S K+ RI+ + E+ ++ KL N +H++++ E + +K E +E E
Sbjct: 998 SKERKLLEERISDLTTNLAEEEEKAKNLTKLKN---KHESMISELEVRLKKEEKSRQELE 1054
Query: 617 EKKAHTEDTTSSSTQMIDGDLQANQA 642
+ K E S + I DLQA A
Sbjct: 1055 KLKRKLEGDASDFHEQI-ADLQAQIA 1079
>gi|55770906 XPA binding protein 2 [Homo sapiens]
Length = 855
Score = 38.1 bits (87), Expect = 0.026
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 132 WKKYADLEKRHDNIKPS-DEVYRRGLQAIPLSVDLWIHYINFLKETL------DPGDPET 184
W +Y +E + KP +++Y R L+ +P S LW Y+ + + DP +
Sbjct: 38 WLRY--IEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDV 95
Query: 185 NNTIRGTFEHAVLAAGTDFRSDRLWEMYINWENEQGNLREVTAIYDRIL-GIPTQLYSHH 243
NN F + RLW Y + +QG + +DR L +P +S
Sbjct: 96 NNCHERAFVFM-------HKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRI 148
Query: 244 FQRFKEHVQNN-LPRDLLTG-EQFIQLRRELA 273
+ + ++++ LP + G +F++L E A
Sbjct: 149 WPLYLRFLRSHPLPETAVRGYRRFLKLSPESA 180
Score = 34.3 bits (77), Expect = 0.38
Identities = 34/144 (23%), Positives = 52/144 (36%), Gaps = 30/144 (20%)
Query: 96 TGWVYLLQYVEQENHLMAAR----KAFDRFFIHYPYCYGYWKKYADLEKRHDNIKPSDEV 151
T WV ++ E L AR KA F W + +LE RH+N + +
Sbjct: 396 TLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRL 455
Query: 152 YRRGLQAIPLSVDLWIHYINFLKETLDPGDPETNNTIRGTFEHAVLAAGTDFRSDRLWEM 211
R+ A+P E D +P N ++S ++W M
Sbjct: 456 LRKAT-ALPAR----------RAEYFDGSEPVQNRV---------------YKSLKVWSM 489
Query: 212 YINWENEQGNLREVTAIYDRILGI 235
+ E G + A+YDRIL +
Sbjct: 490 LADLEESLGTFQSTKAVYDRILDL 513
Score = 32.7 bits (73), Expect = 1.1
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 424 HMLWAAFE---EQQGNINEARNILKTFEEC----VLGLAMVRLRRVSLERRHGNLEEAEH 476
H LW AF E G +++AR IL+ + V LA V + LE RH N +EA
Sbjct: 395 HTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALR 454
Query: 477 LLQDA 481
LL+ A
Sbjct: 455 LLRKA 459
>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
Length = 1780
Score = 37.7 bits (86), Expect = 0.035
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 21/156 (13%)
Query: 462 VSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIE 521
+ LER NL+E + LQD++KN K N +KL + ++ NL + K LL+ E
Sbjct: 1155 LKLER---NLKEFQEHLQDSVKNTKDLNVKE---LKLKEEITQLTNNL-QDMKHLLQLKE 1207
Query: 522 RDKENTKLYLNLLEMEYS----------GDLKQNEENILNCFDKAVHGSLPIKMRITFSQ 571
++E + L+ E S DL++ EE+ + +K IK Q
Sbjct: 1208 EEEETNRQETEKLKEELSASSARTQNLKADLQRKEEDYADLKEKLTDAKKQIKQ----VQ 1263
Query: 572 RKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRK 607
++V + D + +N ++ + ++ +K++
Sbjct: 1264 KEVSVMRDEDKLLRIKINELEKKKNQCSQELDMKQR 1299
>gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]
Length = 1349
Score = 37.4 bits (85), Expect = 0.045
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 458 RLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLL 517
+LR +++ L+E + QD + K +S + +QK + ++
Sbjct: 384 QLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKS---------YTSDLQKKKEEREEIEK 434
Query: 518 EAIERDKENTKLYLNLLEMEYSGDLKQ---NEENILNCFDKAVHGSLPIKMRITFSQRKV 574
+A+E+ K ++K + +L+ S + K + + + D G P M ++ + +
Sbjct: 435 QALEKSKRSSKTFKEMLQDRESQNQKSTVPSRRRMYSFDDVLEEGKRPPTMTVSEASYQS 494
Query: 575 EFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEP--EEKKAHTEDTTSSSTQM 632
E +E+ G+ + D T K +D + + + S+ P E+ A S STQM
Sbjct: 495 ERVEEKGATYPSEIPKEDS-TTFAKREDRVTTEIQLPSQSPVEEQSPASLSSLRSRSTQM 553
>gi|221316634 LIM domain only 7 isoform 2 [Homo sapiens]
Length = 1385
Score = 37.4 bits (85), Expect = 0.045
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 15/180 (8%)
Query: 458 RLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLL 517
+LR +++ L+E + QD + K +S + +QK + ++
Sbjct: 433 QLRYEEMQKIKSQLKEQDQKWQDDLAKWKDRRKS---------YTSDLQKKKEEREEIEK 483
Query: 518 EAIERDKENTKLYLNLLEMEYSGDLKQ---NEENILNCFDKAVHGSLPIKMRITFSQRKV 574
+A+E+ K ++K + +L+ S + K + + + D G P M ++ + +
Sbjct: 484 QALEKSKRSSKTFKEMLQDRESQNQKSTVPSRRRMYSFDDVLEEGKRPPTMTVSEASYQS 543
Query: 575 EFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEP--EEKKAHTEDTTSSSTQM 632
E +E+ G+ + D T K +D + + + S+ P E+ A S STQM
Sbjct: 544 ERVEEKGATYPSEIPKEDS-TTFAKREDRVTTEIQLPSQSPVEEQSPASLSSLRSRSTQM 602
>gi|110815815 centlein isoform 1 [Homo sapiens]
Length = 1406
Score = 35.4 bits (80), Expect = 0.17
Identities = 46/215 (21%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 436 NINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYA 495
N + +NI T ++ + ++R R +SL++++ L+ A+ + ++K K NE +
Sbjct: 965 NREKYKNI--TAQKSSSNIILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQ 1022
Query: 496 VKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQ-NEENILNCFD 554
+++ F+ + K + L + ++KE+ L ++E S ++ EEN F
Sbjct: 1023 QQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDL-----LKKLESSSEITSLAEENSQVTFP 1077
Query: 555 KAVHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQDSLKR------KA 608
+ SL + +++++ KL NA +E L K+ ++K
Sbjct: 1078 RIQVTSLSPSRSMDLEMKQLQY---------KLKNATNE---LTKQSSNVKTLKFELLAK 1125
Query: 609 ENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAV 643
E +E EK + E + +I+ DL+ Q V
Sbjct: 1126 EEHIKEMHEKISRMERDITMKRHLIE-DLKFRQKV 1159
>gi|32567786 keratin 6L [Homo sapiens]
Length = 535
Score = 35.0 bits (79), Expect = 0.22
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 427 WAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAIKNAK 486
WA +EQ N+ RN L+ E LG L R+ ER G L+ +QD +++ K
Sbjct: 174 WALLQEQGQNLGVTRNNLEPLFEAYLGSMRSTLDRLQSER--GRLDSELRNVQDLVEDFK 231
Query: 487 SNNESSFYAVKLARHLFKIQK 507
+ E A + F + K
Sbjct: 232 NKYEDEINKHTAAENEFVVLK 252
>gi|51972208 leucine, glutamate and lysine rich 1 [Homo sapiens]
Length = 388
Score = 35.0 bits (79), Expect = 0.22
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 22/157 (14%)
Query: 504 KIQKNLPKSRKVLLEAIERD----KENTKLYLNLLEMEYSGDL-----KQNEENILNCFD 554
KI+ L K R L E KE TKL L++ E E D+ K+ EE + D
Sbjct: 97 KIEAELAKERAQHLVEFEEQALLFKEETKLQLDI-EKEKHQDVIQKYKKEQEELQMKISD 155
Query: 555 KAVHGSLPIKMRITFSQRKVE-----FLEDFGS---DVNKLLNAYDEHQTLLKEQ-DSLK 605
+ ++ +T + K+ + E+ S ++ L N E ++ LK++ DS
Sbjct: 156 LITGATRDLRQEVTTLKEKLHKSHTRYTEESNSKEKEIENLKNLVAEFESRLKKEIDSND 215
Query: 606 RKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQA 642
+EN +E E+K + + TQ+I+ Q NQ+
Sbjct: 216 SVSENLRKEMEQKSDELKRVMLAQTQLIE---QFNQS 249
>gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo
sapiens]
Length = 597
Score = 34.7 bits (78), Expect = 0.29
Identities = 64/283 (22%), Positives = 109/283 (38%), Gaps = 32/283 (11%)
Query: 293 IEDITDPAKLITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEG-IKRPYFHVKPLEKA 351
IED + + I H I+ + + E+++ +R F+E I + + LE
Sbjct: 9 IEDRLPELEQLERIGLFSHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEINLLELI 68
Query: 352 QLKNWKEYLEF---EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIE-GVRH 407
Q + + F EIEN RV +F+R + W+ Y + + + + +
Sbjct: 69 QRRRTRIGYSFKKDEIENSIVHRVQGVFQRASAKWKDDVQLWLSYVAFCKKWATKTRLSK 128
Query: 408 VFSRACTIHLPKKPMVHMLWAAFE-EQQGNINEARNI----LKTFEEC-VLGLAMVRLRR 461
VFS IH KP + ++ A +E E + + AR + L+ EC L R+
Sbjct: 129 VFSAMLAIH-SNKPALWIMAAKWEMEDRLSSESARQLFLRALRFHPECPKLYKEYFRMEL 187
Query: 462 VSLERRHGNLEEAEHLLQDA------------------IKNAKSNNESSFYAVKL--ARH 501
+ E+ EE E D KN+ S + + + V L
Sbjct: 188 MHAEKLRKEKEEFEKASMDVENPDYSEEILKGELAWIIYKNSVSIIKGAEFHVSLLSIAQ 247
Query: 502 LFKIQKNLPKSRKVLLEAIERDKENTKLYLNLLEMEYSGDLKQ 544
LF K+L K L+A+ D T Y+ E+E ++
Sbjct: 248 LFDFAKDLQKEIYDDLQALHTDDPLTWDYVARRELEIESQTEE 290
>gi|38045919 huntingtin interacting protein 1 [Homo sapiens]
Length = 1037
Score = 34.7 bits (78), Expect = 0.29
Identities = 37/171 (21%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 464 LERRHGNLEEAEHLLQDAIKNAKSNNE-----SSFYAVKLARHLFKIQKNLPKSRKVLLE 518
L R+ + E+A+ L + + A++N + Y+ + H ++KN +++V +
Sbjct: 440 LRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSELVQNHADLLRKNAEVTKQVSMA 499
Query: 519 A---IERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVE 575
++ ++E +L +L + G K E+ L + +K + SQR+++
Sbjct: 500 RQAQVDLEREKKELEDSLERISDQGQRKTQEQ--LEVLES-------LKQELATSQRELQ 550
Query: 576 FLE-DFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDT 625
L+ + N E L KE+DSL A + EE + +DT
Sbjct: 551 VLQGSLETSAQSEANWAAEFAELEKERDSLVSGAAHREEELSALRKELQDT 601
>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 2 [Homo sapiens]
Length = 1403
Score = 34.3 bits (77), Expect = 0.38
Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 19/222 (8%)
Query: 423 VHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAI 482
+ L A ++ Q + E+ +K + L L ++ E GN E L +D +
Sbjct: 479 IKQLEDALKDVQKRMYESEGKVKQMQTHFLALK----EHLTSEAASGNHRLTEEL-KDQL 533
Query: 483 KNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDK-----ENTKLYLNLLEME 537
K+ K E + V R N K ++++E +RD+ EN +L L E
Sbjct: 534 KDLKVKYEGASAEVGKLR-------NQIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCE 586
Query: 538 YSGDLKQNEENILNCFDKAVHGSLPIKMRIT-FSQRKVEFLEDFGSDVNKLLNAYDEHQT 596
+ K + + K + L + + F K + KL+ EH+
Sbjct: 587 MEREKKGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEK 646
Query: 597 LLKEQDSLKRKAEN-GSEEPEEKKAHTEDTTSSSTQMIDGDL 637
L E LKR+ EN ++ + K + S + G+L
Sbjct: 647 SLSEIRQLKRELENVKAKLAQHVKPEEHEQVKSRLEQKSGEL 688
>gi|59850762 uveal autoantigen with coiled-coil domains and ankyrin
repeats isoform 1 [Homo sapiens]
Length = 1416
Score = 34.3 bits (77), Expect = 0.38
Identities = 48/222 (21%), Positives = 84/222 (37%), Gaps = 19/222 (8%)
Query: 423 VHMLWAAFEEQQGNINEARNILKTFEECVLGLAMVRLRRVSLERRHGNLEEAEHLLQDAI 482
+ L A ++ Q + E+ +K + L L ++ E GN E L +D +
Sbjct: 492 IKQLEDALKDVQKRMYESEGKVKQMQTHFLALK----EHLTSEAASGNHRLTEEL-KDQL 546
Query: 483 KNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDK-----ENTKLYLNLLEME 537
K+ K E + V R N K ++++E +RD+ EN +L L E
Sbjct: 547 KDLKVKYEGASAEVGKLR-------NQIKQNEMIVEEFKRDEGKLIEENKRLQKELSMCE 599
Query: 538 YSGDLKQNEENILNCFDKAVHGSLPIKMRIT-FSQRKVEFLEDFGSDVNKLLNAYDEHQT 596
+ K + + K + L + + F K + KL+ EH+
Sbjct: 600 MEREKKGRKVTEMEGQAKELSAKLALSIPAEKFENMKSSLSNEVNEKAKKLVEMEREHEK 659
Query: 597 LLKEQDSLKRKAEN-GSEEPEEKKAHTEDTTSSSTQMIDGDL 637
L E LKR+ EN ++ + K + S + G+L
Sbjct: 660 SLSEIRQLKRELENVKAKLAQHVKPEEHEQVKSRLEQKSGEL 701
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapiens]
Length = 1478
Score = 34.3 bits (77), Expect = 0.38
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 21/176 (11%)
Query: 461 RVSLERRHGNLEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSR---KVLL 517
R LER+ L++ + LQ+ +K AK+ A L +Q L ++ + L
Sbjct: 944 REGLERQVAGLQQEKESLQEKLKAAKA----------AAGSLPGLQAQLAQAEQRAQSLQ 993
Query: 518 EAIERDKENTKLYLNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMR-ITFSQRKVEF 576
EA ++ K L+ M+Y LK E K++ G L + R + ++ VE
Sbjct: 994 EAAHQELNTLKFQLSAEIMDYQSRLKNAGEEC-----KSLRGQLEEQGRQLQAAEEAVEK 1048
Query: 577 LEDFGSDVNKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQM 632
L+ +D+ + L+ H L + Q ++ RK + G+ E+ + ++ ++T++
Sbjct: 1049 LKATQADMGEKLSCTSNH--LAECQAAMLRKDKEGAALREDLERTQKELEKATTKI 1102
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 34.3 bits (77), Expect = 0.38
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 471 LEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLY 530
L A +++ I N K + S V K++K L + + + +A+ KL
Sbjct: 743 LRTAAKEMEEKISNLKEHLASKEVEVA------KLEKQLLEEKAAMTDAMVPRSSYEKLQ 796
Query: 531 LNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVE------FLEDFGSDV 584
+L E E S + +E++ + VH + +++R SQ K E L+ +V
Sbjct: 797 SSL-ESEVSVLASKLKESVKE--KEKVHSEV-VQIRSEVSQVKREKENIQTLLKSKEQEV 852
Query: 585 NKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVY 644
N+LL + + Q L E +KR AE+ S+ E+K + + T++ + +Q Y
Sbjct: 853 NELLQKFQQAQEELAE---MKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSY 909
Query: 645 NYSA 648
+ S+
Sbjct: 910 STSS 913
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 34.3 bits (77), Expect = 0.38
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 471 LEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLY 530
L A +++ I N K + S V K++K L + + + +A+ KL
Sbjct: 732 LRTAAKEMEEKISNLKEHLASKEVEVA------KLEKQLLEEKAAMTDAMVPRSSYEKLQ 785
Query: 531 LNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVE------FLEDFGSDV 584
+L E E S + +E++ + VH + +++R SQ K E L+ +V
Sbjct: 786 SSL-ESEVSVLASKLKESVKE--KEKVHSEV-VQIRSEVSQVKREKENIQTLLKSKEQEV 841
Query: 585 NKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVY 644
N+LL + + Q L E +KR AE+ S+ E+K + + T++ + +Q Y
Sbjct: 842 NELLQKFQQAQEELAE---MKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSY 898
Query: 645 NYSA 648
+ S+
Sbjct: 899 STSS 902
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 34.3 bits (77), Expect = 0.38
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 19/184 (10%)
Query: 471 LEEAEHLLQDAIKNAKSNNESSFYAVKLARHLFKIQKNLPKSRKVLLEAIERDKENTKLY 530
L A +++ I N K + S V K++K L + + + +A+ KL
Sbjct: 711 LRTAAKEMEEKISNLKEHLASKEVEVA------KLEKQLLEEKAAMTDAMVPRSSYEKLQ 764
Query: 531 LNLLEMEYSGDLKQNEENILNCFDKAVHGSLPIKMRITFSQRKVE------FLEDFGSDV 584
+L E E S + +E++ + VH + +++R SQ K E L+ +V
Sbjct: 765 SSL-ESEVSVLASKLKESVKE--KEKVHSEV-VQIRSEVSQVKREKENIQTLLKSKEQEV 820
Query: 585 NKLLNAYDEHQTLLKEQDSLKRKAENGSEEPEEKKAHTEDTTSSSTQMIDGDLQANQAVY 644
N+LL + + Q L E +KR AE+ S+ E+K + + T++ + +Q Y
Sbjct: 821 NELLQKFQQAQEELAE---MKRYAESSSKLEEDKDKKINEMSKEVTKLKEALNSLSQLSY 877
Query: 645 NYSA 648
+ S+
Sbjct: 878 STSS 881
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,315,618
Number of Sequences: 37866
Number of extensions: 1253174
Number of successful extensions: 5927
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 108
Number of HSP's that attempted gapping in prelim test: 5739
Number of HSP's gapped (non-prelim): 284
length of query: 669
length of database: 18,247,518
effective HSP length: 109
effective length of query: 560
effective length of database: 14,120,124
effective search space: 7907269440
effective search space used: 7907269440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.