Guide to the Human Genome
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Name: ZNF554 Sequence: fasta or formatted (538aa) NCBI GI: 156627557
Description:

zinc finger protein 554

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         31           2
 C cysteine            4.5         24           1
 D aspartate           2.6         14           1
 E glutamate           8.6         46           2
 F phenylalanine       3.0         16           1
 G glycine             7.4         40           2
 H histidine           5.6         30           2
 I isoleucine          3.2         17           2
 K lysine              5.8         31           2
 L leucine             8.2         44           2
 M methionine          1.5          8           1
 N asparagine          4.1         22           1
 P proline             3.9         21           1
 Q glutamine           6.7         36           1
 R arginine            5.6         30           2
 S serine              9.9         53           3
 T threonine           5.8         31           1
 V valine              3.7         20           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.2         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 554 
ZNF135                0.337   zinc finger protein 135 
ZNF10                 0.333   zinc finger protein 10 
ZNF420                0.328   zinc finger protein 420 
LOC344065             0.328   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.328   PREDICTED: similar to zinc finger protein 570 [Homo...
LOC344065             0.328   PREDICTED: similar to zinc finger protein 570 [Homo...
ZNF184                0.326   zinc finger protein 184 
ZNF583                0.323   zinc finger protein 583 
ZNF583                0.323   zinc finger protein 583 
ZNF583                0.323   zinc finger protein 583 
ZNF383                0.322   zinc finger protein 383 
ZNF251                0.316   zinc finger protein 251 
ZNF665                0.316   zinc finger protein 665 
ZNF454                0.314   zinc finger protein 454 
ZNF300                0.312   zinc finger protein 300 
ZNF682                0.311   zinc finger protein 682 isoform 1 
ZNF79                 0.310   zinc finger protein 79 
ZNF471                0.310   zinc finger protein 471 
ZNF93                 0.308   zinc finger protein 93 
ZNF543                0.308   zinc finger protein 543 
ZNF347                0.308   zinc finger protein 347 
ZNF470                0.306   zinc finger protein 470 
DKFZp686E2433         0.305   hypothetical protein LOC345462 
ZNF642                0.303   zinc finger protein 642 
ZNF675                0.301   zinc finger protein 675 
ZNF436                0.300   zinc finger protein 436 
ZNF436                0.300   zinc finger protein 436 
ZNF160                0.299   zinc finger protein 160 
ZNF160                0.299   zinc finger protein 160 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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