Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF543 Sequence: fasta or formatted (600aa) NCBI GI: 190610002
Description:

zinc finger protein 543

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         26           2
 C cysteine            5.5         33           1
 D aspartate           3.0         18           2
 E glutamate           9.3         56           2
 F phenylalanine       4.2         25           1
 G glycine             7.3         44           1
 H histidine           6.3         38           2
 I isoleucine          4.8         29           2
 K lysine              8.2         49           2
 L leucine             7.2         43           3
 M methionine          1.5          9           1
 N asparagine          2.5         15           1
 P proline             4.0         24           1
 Q glutamine           5.5         33           2
 R arginine            5.2         31           2
 S serine              6.5         39           2
 T threonine           7.5         45           2
 V valine              3.5         21           1
 W tryptophan          0.7          4           1
 Y tyrosine            3.0         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 543 
ZNF805                0.775   zinc finger protein 805 isoform 1 
ZNF264                0.726   zinc finger protein 264 
ZNF805                0.637   zinc finger protein 805 isoform 2 
ZNF599                0.536   zinc finger protein 599 
ZNF460                0.526   zinc finger protein 460 
ZNF135                0.449   zinc finger protein 135 
ZNF184                0.439   zinc finger protein 184 
ZNF470                0.424   zinc finger protein 470 
ZNF85                 0.424   zinc finger protein 85 
ZNF420                0.420   zinc finger protein 420 
ZNF66                 0.415   PREDICTED: zinc finger protein 66 
ZNF66                 0.415   PREDICTED: zinc finger protein 66 
ZNF66                 0.415   PREDICTED: zinc finger protein 66 
ZNF708                0.414   zinc finger protein 708 
ZNF471                0.411   zinc finger protein 471 
ZNF624                0.411   zinc finger protein 624 
ZNF160                0.410   zinc finger protein 160 
ZNF160                0.410   zinc finger protein 160 
ZNF160                0.410   zinc finger protein 160 
ZNF347                0.409   zinc finger protein 347 
ZNF568                0.408   zinc finger protein 568 
ZNF665                0.408   zinc finger protein 665 
ZNF780A               0.407   zinc finger protein 780A isoform b 
ZNF780A               0.407   zinc finger protein 780A isoform b 
ZNF167                0.407   zinc finger protein 167 isoform 1 
ZNF726                0.407   PREDICTED: zinc finger protein 726 
ZNF726                0.407   PREDICTED: zinc finger protein 726 
ZNF726                0.407   PREDICTED: zinc finger protein 726 
ZNF630                0.404   zinc finger protein 630 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press