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Search of human proteins with 11056056
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
(138 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo ... 295 1e-80
gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo ... 295 1e-80
gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo ... 295 1e-80
gi|4506701 ribosomal protein S23 [Homo sapiens] 53 9e-08
gi|15147240 brother of CDO [Homo sapiens] 30 0.63
gi|110431336 zinc finger and SCAN domain containing 1 [Homo sapi... 30 0.83
gi|63003903 leucine rich repeat containing 10 [Homo sapiens] 28 2.4
gi|40353727 synaptopodin isoform A [Homo sapiens] 28 3.1
gi|51558724 ADAM metallopeptidase with thrombospondin type 1 mot... 28 3.1
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 27 4.1
gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo ... 27 4.1
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 27 4.1
gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo ... 27 5.4
gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo ... 27 5.4
gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo ... 27 5.4
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 27 5.4
gi|19482174 cullin 2 [Homo sapiens] 27 7.0
gi|40353729 Ras and Rab interactor 3 [Homo sapiens] 27 7.0
gi|4757710 amiloride-sensitive cation channel 3 isoform a [Homo ... 27 7.0
gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo ... 27 7.0
gi|9998948 amiloride-sensitive cation channel 3 isoform c [Homo ... 27 7.0
gi|15718767 TRAAK [Homo sapiens] 27 7.0
gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens] 26 9.2
gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homol... 26 9.2
gi|217272839 choline dehydrogenase [Homo sapiens] 26 9.2
gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens] 26 9.2
>gi|11056056 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 295 bits (754), Expect = 1e-80
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG
Sbjct: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
Query: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG
Sbjct: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
Query: 121 VKLTVVRGKYDCGHVQKK 138
VKLTVVRGKYDCGHVQKK
Sbjct: 121 VKLTVVRGKYDCGHVQKK 138
>gi|16950589 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 295 bits (754), Expect = 1e-80
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG
Sbjct: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
Query: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG
Sbjct: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
Query: 121 VKLTVVRGKYDCGHVQKK 138
VKLTVVRGKYDCGHVQKK
Sbjct: 121 VKLTVVRGKYDCGHVQKK 138
>gi|16950591 mitochondrial ribosomal protein S12 precursor [Homo
sapiens]
Length = 138
Score = 295 bits (754), Expect = 1e-80
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG
Sbjct: 1 MSWSGLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRPQLKG 60
Query: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG
Sbjct: 61 VVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPG 120
Query: 121 VKLTVVRGKYDCGHVQKK 138
VKLTVVRGKYDCGHVQKK
Sbjct: 121 VKLTVVRGKYDCGHVQKK 138
>gi|4506701 ribosomal protein S23 [Homo sapiens]
Length = 143
Score = 52.8 bits (125), Expect = 9e-08
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G + ++E
Sbjct: 37 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEE 96
Query: 105 HQIVLVEG-GR----TQDLPGVKLTVVR 127
+ VLV G GR D+PGV+ VV+
Sbjct: 97 NDEVLVAGFGRKGHAVGDIPGVRFKVVK 124
>gi|15147240 brother of CDO [Homo sapiens]
Length = 1114
Score = 30.0 bits (66), Expect = 0.63
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 11/58 (18%)
Query: 5 GLLHGLNTSLTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTE----GRPQL 58
G H + T P++ PRLW +AT G P P KLG E G+P L
Sbjct: 398 GSAHAVVQLRTSRPSITPRLWQDAELAT-------GTPPVSPSKLGNPEQMLRGQPAL 448
>gi|110431336 zinc finger and SCAN domain containing 1 [Homo
sapiens]
Length = 408
Score = 29.6 bits (65), Expect = 0.83
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 35 QMHRLGPP-KRPPRKLGPTEGRPQLKGVVLCTFTRKPKKP 73
++H L PP K+ PR GP E P G R PK+P
Sbjct: 340 KIHLLEPPRKKAPRSKGPRESVPPRDGAQGPVAPRSPKRP 379
>gi|63003903 leucine rich repeat containing 10 [Homo sapiens]
Length = 277
Score = 28.1 bits (61), Expect = 2.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 85 LSTGREAVCFIPGEGHTLQEHQIVLVEGGRTQDLPGVKL 123
L G A+ +PG+ LQE + + + G R D P V L
Sbjct: 149 LHAGSNALRLLPGQLRRLQELRTIWLSGNRLTDFPTVLL 187
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 27.7 bits (60), Expect = 3.1
Identities = 14/41 (34%), Positives = 15/41 (36%)
Query: 41 PPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCC 81
PP PPR P RP V F P+ P A C
Sbjct: 795 PPPPPPRMRSPQPARPGSAAVPGAAFAPIPRSPLPAGPSSC 835
>gi|51558724 ADAM metallopeptidase with thrombospondin type 1 motif,
12 preproprotein [Homo sapiens]
Length = 1594
Score = 27.7 bits (60), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 63 LCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIP-GEGHTLQEHQIVLVEGGRTQD 117
LC +T++P S N C +TG +C G G + Q V EG +T+D
Sbjct: 1454 LCDWTKRPTSTMSCNEHLC-CHWATGNWDLCSTSCGGGFQKRTVQCVPSEGNKTED 1508
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 27.3 bits (59), Expect = 4.1
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 54 GRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHT 101
GRP +G+ L T P +S +R CRV GR+ F GEG +
Sbjct: 1019 GRPD-RGLPLPMETGSPPLHDSYSRSGCRVPRGGGRQGGRFERGEGRS 1065
>gi|239755304 PREDICTED: hypothetical protein XP_002344521 [Homo
sapiens]
Length = 209
Score = 27.3 bits (59), Expect = 4.1
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 17 GPALV--PRLWATCSMATLNQMHRLGPPKRPPRKLGPTE--GRPQLKGVVLCTFTRKPKK 72
GPA + P A ++ L ++ R GP KR P + P + G P L + P+
Sbjct: 56 GPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRKPPIDPLGGPALPRL------SSPEP 109
Query: 73 PNSANRKCCRVRLSTGREAVCFIPGEG 99
P + + + R+RL C GEG
Sbjct: 110 PPAGSDRDWRLRL-------CLREGEG 129
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 27.3 bits (59), Expect = 4.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 18 PALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTE-GRPQLKGVVLCTFTRKPKKPNSA 76
P L P+ A C+ + + R GPP+RPP PT P L+ L + + P S+
Sbjct: 304 PRLSPQA-ARCTALSTEKPDRPGPPRRPP---APTPVSAPTLRSAPLDAHRLRERLPESS 359
>gi|239750729 PREDICTED: hypothetical protein XP_002347517 [Homo
sapiens]
Length = 263
Score = 26.9 bits (58), Expect = 5.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 14 LTCGPALVPRLWATCSMATLNQMHRLGPPKRPPRKL-GPTEGRPQLKG 60
L C + V RLW + AT H PP P L G + QL G
Sbjct: 33 LRCSSSSVKRLWPPIAGATRAPRHSWPPPTPGPASLAGSLQRNGQLSG 80
>gi|239749797 PREDICTED: hypothetical protein XP_002347167 [Homo
sapiens]
Length = 209
Score = 26.9 bits (58), Expect = 5.4
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 17 GPALV--PRLWATCSMATLNQMHRLGPPKRPPRKLGPTE--GRPQLKGVVLCTFTRKPKK 72
GPA + P A ++ L ++ R GP KR P + P + G P L + P+
Sbjct: 56 GPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRNPPIDPLGGPALPRL------SSPEP 109
Query: 73 PNSANRKCCRVRLSTGREAVCFIPGEG 99
P + + + R+RL C GEG
Sbjct: 110 PPAGSDRDWRLRL-------CLREGEG 129
>gi|239744069 PREDICTED: hypothetical protein XP_002344285 [Homo
sapiens]
Length = 209
Score = 26.9 bits (58), Expect = 5.4
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 17/87 (19%)
Query: 17 GPALV--PRLWATCSMATLNQMHRLGPPKRPPRKLGPTE--GRPQLKGVVLCTFTRKPKK 72
GPA + P A ++ L ++ R GP KR P + P + G P L + P+
Sbjct: 56 GPAFLAAPAFGAGLAVGRLRRVGRRGPEKRQPGRNPPIDPLGGPALPRL------SSPEP 109
Query: 73 PNSANRKCCRVRLSTGREAVCFIPGEG 99
P + + + R+RL C GEG
Sbjct: 110 PPAGSDRDWRLRL-------CLREGEG 129
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 26.9 bits (58), Expect = 5.4
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 49 LGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEGHTLQEH 105
LG G P G VLC + P +P + + RL G V +GH +EH
Sbjct: 38 LGRVAGEPAADGTVLCPCCQAPTRPQALSTNLQLARLVEGLAQV----PQGH-CEEH 89
>gi|19482174 cullin 2 [Homo sapiens]
Length = 745
Score = 26.6 bits (57), Expect = 7.0
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 6 LLHGLNTSLTCGPALVPRLWATCSMATLNQMHRL 39
L+HGL+ S+ A++ +L C +++HR+
Sbjct: 443 LIHGLSMSMDSEEAMINKLKQACGYEFTSKLHRM 476
>gi|40353729 Ras and Rab interactor 3 [Homo sapiens]
Length = 985
Score = 26.6 bits (57), Expect = 7.0
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 31 ATLNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKC-CRVRLSTGR 89
++LN G P PPR P G P + + +P + + C C + LS G
Sbjct: 182 SSLNPPQERGKPAEPPRDRAP--GFPLVSSL----------RPTAHDANCACEIELSVGN 229
Query: 90 EAVCFI 95
+ + F+
Sbjct: 230 DRLWFV 235
>gi|4757710 amiloride-sensitive cation channel 3 isoform a [Homo
sapiens]
Length = 531
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 5 GLLHGLNTSLTCGP---ALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRP-QLKG 60
G+ G T ++C + +P W CS A+LN + P P P+ P L G
Sbjct: 256 GVSPGYQTFVSCQQQQLSFLPPPWGDCSSASLNPNYE-PEPSDPLGSPSPSPSPPYTLMG 314
Query: 61 VVLCTFTRKPKKPNSANRKC-CRVRLSTGREAVC 93
L TR RKC CR+ G VC
Sbjct: 315 CRLACETR------YVARKCGCRMVYMPGDVPVC 342
>gi|9998946 amiloride-sensitive cation channel 3 isoform b [Homo
sapiens]
Length = 549
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 5 GLLHGLNTSLTCGP---ALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRP-QLKG 60
G+ G T ++C + +P W CS A+LN + P P P+ P L G
Sbjct: 256 GVSPGYQTFVSCQQQQLSFLPPPWGDCSSASLNPNYE-PEPSDPLGSPSPSPSPPYTLMG 314
Query: 61 VVLCTFTRKPKKPNSANRKC-CRVRLSTGREAVC 93
L TR RKC CR+ G VC
Sbjct: 315 CRLACETR------YVARKCGCRMVYMPGDVPVC 342
>gi|9998948 amiloride-sensitive cation channel 3 isoform c [Homo
sapiens]
Length = 543
Score = 26.6 bits (57), Expect = 7.0
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 5 GLLHGLNTSLTCGP---ALVPRLWATCSMATLNQMHRLGPPKRPPRKLGPTEGRP-QLKG 60
G+ G T ++C + +P W CS A+LN + P P P+ P L G
Sbjct: 256 GVSPGYQTFVSCQQQQLSFLPPPWGDCSSASLNPNYE-PEPSDPLGSPSPSPSPPYTLMG 314
Query: 61 VVLCTFTRKPKKPNSANRKC-CRVRLSTGREAVC 93
L TR RKC CR+ G VC
Sbjct: 315 CRLACETR------YVARKCGCRMVYMPGDVPVC 342
>gi|15718767 TRAAK [Homo sapiens]
Length = 393
Score = 26.6 bits (57), Expect = 7.0
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 38 RLGPPKRPPRKLGPTEGRPQLKGV 61
R PP++P R GP GRP+ KGV
Sbjct: 370 RPNPPRKPVRPRGP--GRPRDKGV 391
>gi|8923946 neutral sphingomyelin phosphodiesterase 3 [Homo sapiens]
Length = 655
Score = 26.2 bits (56), Expect = 9.2
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 33 LNQMHRLGPPKRPPRKLGPTEGRPQLKGVVLCT 65
L Q H L R P +LGP E +P G +L T
Sbjct: 522 LEQQHSLFTHYRDPCRLGPGEEKPWAIGTLLDT 554
>gi|71274111 v-maf musculoaponeurotic fibrosarcoma oncogene homolog
A [Homo sapiens]
Length = 353
Score = 26.2 bits (56), Expect = 9.2
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 40 GPPKRPPRKLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRLSTGREAVCFIPGEG 99
GPP P +G T G+P L+ + + + P + N T +AV + G G
Sbjct: 95 GPPSGGPGAVGGTSGKPALEDLYWMSGYQHHLNPEALN--------LTPEDAVEALIGSG 146
Query: 100 HTLQEH 105
H H
Sbjct: 147 HHGAHH 152
>gi|217272839 choline dehydrogenase [Homo sapiens]
Length = 594
Score = 26.2 bits (56), Expect = 9.2
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 88 GREAVCFIPGEGHTLQEHQIVLVEGGRTQDL 118
G VC +PG G LQ+H + ++ T+ +
Sbjct: 320 GIPVVCHLPGVGQNLQDHLEIYIQQACTRPI 350
>gi|92087055 PERQ amino acid rich, with GYF domain 1 [Homo sapiens]
Length = 1035
Score = 26.2 bits (56), Expect = 9.2
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 18 PALVPRLWATC-----SMATL--------NQMHRLGPPKRPPRKLGPTEGRPQLKGV 61
P+ P LWA SM TL Q+H+ PP+ P R P R QL G+
Sbjct: 754 PSSPPPLWAGLAKQGLSMKTLLELQLEGERQLHKQPPPREPARAQAPNH-RVQLGGL 809
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,865,597
Number of Sequences: 37866
Number of extensions: 337313
Number of successful extensions: 822
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 28
length of query: 138
length of database: 18,247,518
effective HSP length: 91
effective length of query: 47
effective length of database: 14,801,712
effective search space: 695680464
effective search space used: 695680464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.