Guide to the Human Genome
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Name: C14orf179 Sequence: fasta or formatted (213aa) NCBI GI: 156523262
Description:

hypothetical protein LOC112752 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {208aa} hypothetical protein LOC112752 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         17           2
 C cysteine            0.9          2           1
 D aspartate           9.4         20           2
 E glutamate           9.9         21           2
 F phenylalanine       0.9          2           1
 G glycine             5.6         12           2
 H histidine           3.3          7           2
 I isoleucine          3.3          7           2
 K lysine              5.2         11           1
 L leucine            12.2         26           2
 M methionine          1.9          4           1
 N asparagine          2.8          6           1
 P proline             3.8          8           2
 Q glutamine           6.1         13           2
 R arginine            5.2         11           2
 S serine              6.6         14           2
 T threonine           6.6         14           1
 V valine              4.7         10           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC112752 isoform 1 
C14orf179             0.818   hypothetical protein LOC112752 isoform 2 
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
LOC100291523          0.017   PREDICTED: hypothetical protein XP_002348200 
LOC100288052          0.017   PREDICTED: hypothetical protein XP_002344236 
DCP2                  0.012   DCP2 decapping enzyme 
STARD8                0.012   StAR-related lipid transfer (START) domain containi...
STARD8                0.012   StAR-related lipid transfer (START) domain containi...
STARD8                0.012   StAR-related lipid transfer (START) domain containin...
SLC22A7               0.010   solute carrier family 22 member 7 isoform a 
PBRM1                 0.010   polybromo 1 isoform 1 
PBRM1                 0.010   polybromo 1 isoform 4 
C7orf26               0.010   hypothetical protein LOC79034 
MYO9A                 0.007   myosin IXA 
SLBP                  0.007   stem-loop (histone) binding protein 
KLHL3                 0.007   kelch-like 3 
GCNT3                 0.007   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
LOC100288526          0.007   PREDICTED: hypothetical protein XP_002344271 
LOC100288499          0.007   PREDICTED: hypothetical protein XP_002344270 
LOC100288468          0.007   PREDICTED: hypothetical protein XP_002344269 
LOC100288402          0.007   PREDICTED: hypothetical protein XP_002344267 
LOC100288329          0.007   PREDICTED: hypothetical protein XP_002344265 
LOC100288220          0.007   PREDICTED: hypothetical protein XP_002344262 
LOC100288188          0.007   PREDICTED: hypothetical protein XP_002344261 
LOC100288157          0.007   PREDICTED: hypothetical protein XP_002344260 
LOC100288124          0.007   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.007   PREDICTED: hypothetical protein XP_002344256 
SCRIB                 0.007   scribble isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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