Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C14orf179 Sequence: fasta or formatted (208aa) NCBI GI: 156523264
Description:

hypothetical protein LOC112752 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {213aa} hypothetical protein LOC112752 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         15           2
 C cysteine            0.5          1           1
 D aspartate           9.6         20           2
 E glutamate          10.6         22           2
 F phenylalanine       1.9          4           1
 G glycine             5.8         12           2
 H histidine           1.9          4           1
 I isoleucine          3.8          8           2
 K lysine              5.3         11           1
 L leucine            11.1         23           2
 M methionine          1.9          4           1
 N asparagine          2.4          5           1
 P proline             4.3          9           2
 Q glutamine           5.3         11           2
 R arginine            6.7         14           2
 S serine              7.7         16           2
 T threonine           5.3         11           1
 V valine              4.8         10           1
 W tryptophan          1.9          4           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC112752 isoform 2 
C14orf179             0.845   hypothetical protein LOC112752 isoform 1 
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
STARD13               0.020   StAR-related lipid transfer (START) domain containin...
SLBP                  0.018   stem-loop (histone) binding protein 
PCNT                  0.018   pericentrin 
EPB41L5               0.013   erythrocyte membrane protein band 4.1 like 5 
STARD8                0.013   StAR-related lipid transfer (START) domain containi...
STARD8                0.013   StAR-related lipid transfer (START) domain containi...
STARD8                0.013   StAR-related lipid transfer (START) domain containin...
SLC22A7               0.010   solute carrier family 22 member 7 isoform a 
PBRM1                 0.010   polybromo 1 isoform 1 
PBRM1                 0.010   polybromo 1 isoform 4 
ZNF318                0.008   zinc finger protein 318 
SPTAN1                0.008   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.008   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
GCNT3                 0.008   glucosaminyl (N-acetyl) transferase 3, mucin type [Ho...
LOC100288526          0.008   PREDICTED: hypothetical protein XP_002344271 
LOC100288499          0.008   PREDICTED: hypothetical protein XP_002344270 
LOC100288468          0.008   PREDICTED: hypothetical protein XP_002344269 
LOC100288402          0.008   PREDICTED: hypothetical protein XP_002344267 
LOC100288329          0.008   PREDICTED: hypothetical protein XP_002344265 
LOC100288220          0.008   PREDICTED: hypothetical protein XP_002344262 
LOC100288188          0.008   PREDICTED: hypothetical protein XP_002344261 
LOC100288157          0.008   PREDICTED: hypothetical protein XP_002344260 
LOC100288124          0.008   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.008   PREDICTED: hypothetical protein XP_002344256 
SCRIB                 0.008   scribble isoform b 
SCRIB                 0.008   scribble isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press