Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100288402 Sequence: fasta or formatted (97aa) NCBI GI: 239747060
Description:

PREDICTED: hypothetical protein XP_002344267

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            3.1          3           1
 D aspartate           4.1          4           1
 E glutamate          14.4         14           1
 F phenylalanine       1.0          1           1
 G glycine            12.4         12           1
 H histidine           1.0          1           1
 I isoleucine          7.2          7           1
 K lysine              5.2          5           1
 L leucine             6.2          6           1
 M methionine          7.2          7           1
 N asparagine         13.4         13           1
 P proline             1.0          1           1
 Q glutamine           2.1          2           1
 R arginine            2.1          2           1
 S serine              2.1          2           1
 T threonine           1.0          1           1
 V valine              2.1          2           1
 W tryptophan         13.4         13           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344267 
LOC100288157          1.000   PREDICTED: hypothetical protein XP_002344260 
LOC100288526          0.990   PREDICTED: hypothetical protein XP_002344271 
LOC100288329          0.990   PREDICTED: hypothetical protein XP_002344265 
LOC100288124          0.990   PREDICTED: hypothetical protein XP_002344259 
LOC100288025          0.990   PREDICTED: hypothetical protein XP_002344256 
LOC100288053          0.986   PREDICTED: hypothetical protein XP_002344257 
LOC100288220          0.976   PREDICTED: hypothetical protein XP_002344262 
LOC100288188          0.971   PREDICTED: hypothetical protein XP_002344261 
LOC100288468          0.971   PREDICTED: hypothetical protein XP_002344269 
LOC100288499          0.928   PREDICTED: hypothetical protein XP_002344270 
LOC100288435          0.202   PREDICTED: hypothetical protein XP_002344268 
LOC100288595          0.197   PREDICTED: hypothetical protein XP_002344273 
LOC100288561          0.197   PREDICTED: hypothetical protein XP_002344272 
LOC100288363          0.197   PREDICTED: hypothetical protein XP_002344266 
LOC100288293          0.197   PREDICTED: hypothetical protein XP_002344264 
LOC100288259          0.197   PREDICTED: hypothetical protein XP_002344263 
LOC100288085          0.197   PREDICTED: hypothetical protein XP_002344258 
LOC100293888          0.053   PREDICTED: similar to Nanog homeobox isoform 2 [Hom...
LOC642424             0.038   PREDICTED: similar to hCG1742442 
NANOG                 0.024   Nanog homeobox 
LOC100293888          0.024   PREDICTED: similar to Nanog homeobox isoform 1 [Hom...
LOC100292655          0.014   PREDICTED: similar to armadillo repeat containing, ...
CSTF2                 0.014   cleavage stimulation factor subunit 2 
UTRN                  0.014   utrophin 
TAS1R1                0.014   sweet taste receptor T1r isoform b 
TAS1R1                0.014   sweet taste receptor T1r isoform d 
TAS1R1                0.014   sweet taste receptor T1r isoform c 
C14orf179             0.014   hypothetical protein LOC112752 isoform 2 
C14orf179             0.014   hypothetical protein LOC112752 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press