Guide to the Human Genome
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Name: C12orf24 Sequence: fasta or formatted (273aa) NCBI GI: 156231347
Description:

hypothetical protein LOC29902

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         16           3
 C cysteine            1.5          4           1
 D aspartate           3.3          9           2
 E glutamate           6.6         18           2
 F phenylalanine       1.8          5           2
 G glycine             7.7         21           5
 H histidine           4.8         13           2
 I isoleucine          3.7         10           1
 K lysine              7.7         21           2
 L leucine             8.4         23           2
 M methionine          4.8         13           2
 N asparagine          2.9          8           2
 P proline             4.4         12           2
 Q glutamine           6.2         17           1
 R arginine            5.9         16           2
 S serine             12.1         33           3
 T threonine           5.1         14           2
 V valine              2.2          6           1
 W tryptophan          1.5          4           1
 Y tyrosine            3.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC29902 
C13orf30              0.037   hypothetical protein LOC144809 
KIAA1267              0.024   hypothetical protein LOC284058 
ZSCAN23               0.022   zinc finger protein 390 
ZNF778                0.019   zinc finger protein 778 
LOR                   0.019   loricrin 
PRR12                 0.019   proline rich 12 
GRRP1                 0.017   glycine/arginine rich protein 1 
BCLAF1                0.015   BCL2-associated transcription factor 1 isoform 3 [H...
XYLT1                 0.015   xylosyltransferase I 
HMX1                  0.015   homeo box (H6 family) 1 
ZBTB7C                0.015   zinc finger and BTB domain containing 7C 
GRASP                 0.015   GRP1 (general receptor for phosphoinositides 1)-asso...
ZNF461                0.013   gonadotropin inducible transcription repressor 1 [Ho...
ERCC5                 0.013   XPG-complementing protein 
RPP25                 0.013   ribonuclease P 25kDa subunit 
CLIC6                 0.013   chloride intracellular channel 6 
CEBPA                 0.011   CCAAT/enhancer binding protein alpha 
LOC731605             0.011   PREDICTED: similar to BCL2-associated transcription...
LOC731605             0.011   PREDICTED: similar to BCL2-associated transcription...
BCLAF1                0.011   BCL2-associated transcription factor 1 isoform 2 [H...
BCLAF1                0.011   BCL2-associated transcription factor 1 isoform 1 [Hom...
XG                    0.011   XG glycoprotein isoform 2 precursor 
ZNF367                0.011   zinc finger protein 367 
PRPF40A               0.011   formin binding protein 3 
LOC100292082          0.009   PREDICTED: hypothetical protein XP_002345881 
ATRX                  0.009   transcriptional regulator ATRX isoform 2 
ATRX                  0.009   transcriptional regulator ATRX isoform 1 
AVEN                  0.009   cell death regulator aven 
ZBTB7A                0.009   zinc finger and BTB domain containing 7A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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