Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C13orf30 Sequence: fasta or formatted (139aa) NCBI GI: 32698855
Description:

hypothetical protein LOC144809

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          9           1
 C cysteine            0.7          1           1
 D aspartate           1.4          2           1
 E glutamate           1.4          2           1
 F phenylalanine       1.4          2           1
 G glycine             2.2          3           1
 H histidine           1.4          2           1
 I isoleucine          5.0          7           1
 K lysine              5.0          7           1
 L leucine            10.8         15           2
 M methionine          2.2          3           1
 N asparagine          3.6          5           1
 P proline             7.2         10           2
 Q glutamine          11.5         16           2
 R arginine           12.2         17           2
 S serine              8.6         12           1
 T threonine           5.0          7           1
 V valine              6.5          9           2
 W tryptophan          2.2          3           1
 Y tyrosine            5.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC144809 
C12orf24              0.078   hypothetical protein LOC29902 
LOC389333             0.016   hypothetical protein LOC389333 
CEP250                0.008   centrosomal protein 2 
C8orf40               0.008   hypothetical protein LOC114926 
C8orf40               0.008   hypothetical protein LOC114926 
C8orf40               0.008   hypothetical protein LOC114926 
C8orf40               0.008   hypothetical protein LOC114926 
SNX22                 0.008   sorting nexin 22 
SIX4                  0.008   sine oculis homeobox homolog 4 
ERAP2                 0.004   endoplasmic reticulum aminopeptidase 2 
ERAP2                 0.004   endoplasmic reticulum aminopeptidase 2 
ABCB4                 0.004   ATP-binding cassette, subfamily B, member 4 isoform B...
ABCB4                 0.004   ATP-binding cassette, subfamily B, member 4 isoform C...
ABCB4                 0.004   ATP-binding cassette, subfamily B, member 4 isoform A...
BSDC1                 0.004   BSD domain containing 1 isoform d 
BSDC1                 0.004   BSD domain containing 1 isoform c 
BSDC1                 0.004   BSD domain containing 1 isoform a 
BSDC1                 0.004   BSD domain containing 1 isoform b 
AGTPBP1               0.004   ATP/GTP binding protein 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press