Guide to the Human Genome
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Name: SENP6 Sequence: fasta or formatted (1105aa) NCBI GI: 156105703
Description:

SUMO1/sentrin specific peptidase 6 isoform 2

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [1112aa] SUMO1/sentrin specific peptidase 6 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9         43           2
 C cysteine            2.4         26           1
 D aspartate           5.7         63           5
 E glutamate           9.0         99           4
 F phenylalanine       3.9         43           2
 G glycine             4.6         51           2
 H histidine           2.4         26           2
 I isoleucine          6.5         72           2
 K lysine              8.7         96           2
 L leucine             7.8         86           2
 M methionine          1.2         13           1
 N asparagine          6.9         76           2
 P proline             5.2         57           4
 Q glutamine           4.3         48           2
 R arginine            5.1         56           2
 S serine              9.4        104           3
 T threonine           5.0         55           2
 V valine              5.5         61           2
 W tryptophan          0.7          8           1
 Y tyrosine            2.0         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SUMO1/sentrin specific peptidase 6 isoform 2 
SENP6                 0.997   SUMO1/sentrin specific peptidase 6 isoform 1 
SENP7                 0.083   sentrin/SUMO-specific protease 7 isoform 2 
SENP7                 0.083   sentrin/SUMO-specific protease 7 isoform 1 
SENP1                 0.021   sentrin/SUMO-specific protease 1 
SENP2                 0.020   SUMO1/sentrin/SMT3 specific protease 2 
SENP3                 0.014   SUMO1/sentrin/SMT3 specific protease 3 
SENP5                 0.013   SUMO1/sentrin specific peptidase 5 
DSPP                  0.006   dentin sialophosphoprotein preproprotein 
THOC2                 0.005   THO complex 2 
PHACTR2               0.005   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.005   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.005   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.005   phosphatase and actin regulator 2 isoform 1 
TPR                   0.005   nuclear pore complex-associated protein TPR 
BRWD1                 0.005   bromodomain and WD repeat domain containing 1 isofor...
BRWD1                 0.005   bromodomain and WD repeat domain containing 1 isofor...
MAP2                  0.005   microtubule-associated protein 2 isoform 1 
VPS72                 0.005   transcription factor-like 1 
ATRX                  0.004   transcriptional regulator ATRX isoform 2 
ATRX                  0.004   transcriptional regulator ATRX isoform 1 
XIRP2                 0.004   xin actin-binding repeat containing 2 isoform 1 [Ho...
ARID4B                0.004   AT rich interactive domain 4B isoform 2 
ARID4B                0.004   AT rich interactive domain 4B isoform 1 
HTATSF1               0.004   HIV-1 Tat specific factor 1 
HTATSF1               0.004   HIV-1 Tat specific factor 1 
SENP8                 0.004   SUMO/sentrin specific peptidase family member 8 [Hom...
NCOR1                 0.004   nuclear receptor co-repressor 1 
MEPE                  0.004   matrix, extracellular phosphoglycoprotein with ASARM ...
NRD1                  0.004   nardilysin isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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