Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SENP8 Sequence: fasta or formatted (212aa) NCBI GI: 33942066
Description:

SUMO/sentrin specific peptidase family member 8

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0         17           2
 C cysteine            2.4          5           1
 D aspartate           6.6         14           1
 E glutamate           5.2         11           2
 F phenylalanine       6.6         14           2
 G glycine             3.3          7           2
 H histidine           3.3          7           1
 I isoleucine          4.2          9           2
 K lysine              6.1         13           2
 L leucine            10.8         23           2
 M methionine          1.9          4           1
 N asparagine          5.7         12           1
 P proline             4.2          9           2
 Q glutamine           5.7         12           2
 R arginine            2.8          6           1
 S serine              9.0         19           1
 T threonine           3.8          8           1
 V valine              5.7         12           2
 W tryptophan          1.4          3           1
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SUMO/sentrin specific peptidase family member 8 [Hom... 
SENP5                 0.049   SUMO1/sentrin specific peptidase 5 
SENP3                 0.041   SUMO1/sentrin/SMT3 specific protease 3 
SENP1                 0.029   sentrin/SUMO-specific protease 1 
SENP6                 0.020   SUMO1/sentrin specific peptidase 6 isoform 2 
SENP6                 0.020   SUMO1/sentrin specific peptidase 6 isoform 1 
MAGEB5                0.012   PREDICTED: melanoma antigen family B, 5 
MAGEB5                0.012   PREDICTED: melanoma antigen family B, 5 
MAGEB5                0.012   PREDICTED: melanoma antigen family B, 5 
MAP3K5                0.007   mitogen-activated protein kinase kinase kinase 5 [Hom...
KIAA1731              0.007   hypothetical protein LOC85459 
SENP7                 0.007   sentrin/SUMO-specific protease 7 isoform 2 
SENP7                 0.007   sentrin/SUMO-specific protease 7 isoform 1 
NEB                   0.007   nebulin 
SENP2                 0.007   SUMO1/sentrin/SMT3 specific protease 2 
GIMAP8                0.007   GTPase, IMAP family member 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press