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Search of human proteins with 15553099
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
(373 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|15553099 sorting nexin 21 isoform a [Homo sapiens] 753 0.0
gi|23510350 sorting nexin 21 isoform b [Homo sapiens] 400 e-112
gi|111118961 sorting nexin 21 isoform d [Homo sapiens] 303 2e-82
gi|111118959 sorting nexin 21 isoform c [Homo sapiens] 297 1e-80
gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens] 158 9e-39
gi|46370089 sorting nexin 15 isoform B [Homo sapiens] 49 1e-05
gi|22547191 sorting nexin 15 isoform A [Homo sapiens] 49 1e-05
gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [H... 48 1e-05
gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 48 1e-05
gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [H... 48 1e-05
gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens] 45 8e-05
gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens] 42 9e-04
gi|75677335 digestive-organ expansion factor homolog [Homo sapiens] 41 0.002
gi|17864088 sorting nexin 13 [Homo sapiens] 41 0.002
gi|148728188 integrin, alpha E precursor [Homo sapiens] 40 0.003
gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1 is... 40 0.003
gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens] 40 0.004
gi|55956788 nucleolin [Homo sapiens] 39 0.006
gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens] 39 0.008
gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens] 39 0.008
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 39 0.008
gi|23238244 sorting nexin 16 isoform a [Homo sapiens] 39 0.008
gi|23238246 sorting nexin 16 isoform a [Homo sapiens] 39 0.008
gi|25777744 hypothetical protein LOC267004 [Homo sapiens] 39 0.010
gi|115529449 upstream binding transcription factor, RNA polymera... 39 0.010
gi|115529451 upstream binding transcription factor, RNA polymera... 39 0.010
gi|7657671 upstream binding transcription factor, RNA polymerase... 39 0.010
gi|148762982 hypothetical protein LOC387640 [Homo sapiens] 39 0.010
gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens] 38 0.013
gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens] 38 0.013
>gi|15553099 sorting nexin 21 isoform a [Homo sapiens]
Length = 373
Score = 753 bits (1944), Expect = 0.0
Identities = 373/373 (100%), Positives = 373/373 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR 180
KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR 180
Query: 181 NLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFFV 240
NLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFFV
Sbjct: 181 NLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFFV 240
Query: 241 LPELRRAQSLTCTGLYREALALWANAWQLQAQLGTPSGPDRPLLTLAGLAVCHQELEDPG 300
LPELRRAQSLTCTGLYREALALWANAWQLQAQLGTPSGPDRPLLTLAGLAVCHQELEDPG
Sbjct: 241 LPELRRAQSLTCTGLYREALALWANAWQLQAQLGTPSGPDRPLLTLAGLAVCHQELEDPG 300
Query: 301 EARACCEKALQLLGDKSLHPLLAPFLEAHVRLSWRLGLDKRQSEARLQALQEAGLTPTPP 360
EARACCEKALQLLGDKSLHPLLAPFLEAHVRLSWRLGLDKRQSEARLQALQEAGLTPTPP
Sbjct: 301 EARACCEKALQLLGDKSLHPLLAPFLEAHVRLSWRLGLDKRQSEARLQALQEAGLTPTPP 360
Query: 361 PSLKELLIKEVLD 373
PSLKELLIKEVLD
Sbjct: 361 PSLKELLIKEVLD 373
>gi|23510350 sorting nexin 21 isoform b [Homo sapiens]
Length = 199
Score = 400 bits (1029), Expect = e-112
Identities = 196/197 (99%), Positives = 197/197 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR 180
KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHR 180
Query: 181 NLQRQFRGPMAAISFPR 197
NLQRQFRGPMAAISFP+
Sbjct: 181 NLQRQFRGPMAAISFPQ 197
>gi|111118961 sorting nexin 21 isoform d [Homo sapiens]
Length = 158
Score = 303 bits (776), Expect = 2e-82
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
KSRNTLAPQRLLFEVTSANVVKDPPSKYV
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPSKYV 149
>gi|111118959 sorting nexin 21 isoform c [Homo sapiens]
Length = 152
Score = 297 bits (760), Expect = 1e-80
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT
Sbjct: 1 MHRGTQEGAMASRLLHRLRHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGT 60
Query: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK
Sbjct: 61 LSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK 120
Query: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
KSRNTLAPQRLLFEVTSANVVKDPPS
Sbjct: 121 KSRNTLAPQRLLFEVTSANVVKDPPS 146
>gi|33504571 sorting nexin 20 isoform 1 [Homo sapiens]
Length = 316
Score = 158 bits (399), Expect = 9e-39
Identities = 103/281 (36%), Positives = 145/281 (51%), Gaps = 10/281 (3%)
Query: 100 PPPDGQW--------GSQLLARQLQDFWKKSRNTLAPQRLLFEVTSANVVKDPPSKYVLY 151
P PDG S + R+LQ +W+ + +LLFE+ SA + + SK+V+Y
Sbjct: 37 PGPDGHLDTHSGLSSNSSMTTRELQQYWQNQKCRWKHVKLLFEIASARIEERKVSKFVVY 96
Query: 152 TLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIAR 211
+ VI G D A + RRYSDF +L + L + FR + + FPRK L NF E I
Sbjct: 97 QIIVIQTGSFDNNKAVLERRYSDFAKLQKALLKTFREEIEDVEFPRKHLTGNFAEEMICE 156
Query: 212 RSRAFEQFLGHLQAVPELRHAPDLQDFFVLPELRRAQSLTCTGLYREALALWANAWQLQA 271
R RA +++LG L A+ +R + + DF PELR A G Y AL L LQ
Sbjct: 157 RRRALQEYLGLLYAIRCVRRSREFLDFLTRPELREAFGCLRAGQYPRALELLLRVLPLQE 216
Query: 272 QLGTPSGPDRPLLTLAGLAVCHQELEDPGEARACCEKALQLLGDKSLHPLLAPFLEAHVR 331
+L T P + L + +CH++L+ P EA A E+ALQ L + H AP L+A VR
Sbjct: 217 KL-TAHCPAAAVPALCAVLLCHRDLDRPAEAFAAGERALQRLQAREGHRYYAPLLDAMVR 275
Query: 332 LSWRLGLDKRQSEARLQALQEAGLTPTPPPSLKELLIKEVL 372
L++ LG D + RL+ Q TP +LKEL ++E L
Sbjct: 276 LAYALGKDFVTLQERLEESQLRRPTPR-GITLKELTVREYL 315
>gi|46370089 sorting nexin 15 isoform B [Homo sapiens]
Length = 256
Score = 48.5 bits (114), Expect = 1e-05
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 141 VKDP---PSKYVLYTLA---VIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAI- 193
V DP P Y Y + + P D + + +RYSDF +LH +L R +
Sbjct: 15 VSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLFRRLE 74
Query: 194 ---SFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFFVLPELRR 246
+FPR ++ F A I R + E L +P L ++P L++FF E+ R
Sbjct: 75 EFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLKEFFRGGEVTR 130
>gi|22547191 sorting nexin 15 isoform A [Homo sapiens]
Length = 342
Score = 48.5 bits (114), Expect = 1e-05
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 141 VKDP---PSKYVLYTLA---VIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAI- 193
V DP P Y Y + + P D + + +RYSDF +LH +L R +
Sbjct: 15 VSDPRTHPKGYTEYKVTAQFISKKDPEDVKEVVVWKRYSDFRKLHGDLAYTHRNLFRRLE 74
Query: 194 ---SFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFFVLPELRR 246
+FPR ++ F A I R + E L +P L ++P L++FF E+ R
Sbjct: 75 EFPAFPRAQVFGRFEASVIEERRKGAEDLLRFTVHIPALNNSPQLKEFFRGGEVTR 130
>gi|31563383 serum/glucocorticoid regulated kinase 3 isoform 2 [Homo
sapiens]
Length = 464
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 168 ISRRYSDFERLHRNLQRQFRGPMAAISFPRKRL-RRNFTAETIARRSRAFEQFLGHLQAV 226
+ RRY++F++L+ L++QF P A+ P KR+ NF + I +R +F+ +L
Sbjct: 47 VFRRYAEFDKLYNTLKKQF--PAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRY 104
Query: 227 PELRHAPDLQDF 238
PEL + PD++ F
Sbjct: 105 PELYNHPDVRAF 116
>gi|31563382 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 168 ISRRYSDFERLHRNLQRQFRGPMAAISFPRKRL-RRNFTAETIARRSRAFEQFLGHLQAV 226
+ RRY++F++L+ L++QF P A+ P KR+ NF + I +R +F+ +L
Sbjct: 47 VFRRYAEFDKLYNTLKKQF--PAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRY 104
Query: 227 PELRHAPDLQDF 238
PEL + PD++ F
Sbjct: 105 PELYNHPDVRAF 116
>gi|75813626 serum/glucocorticoid regulated kinase 3 isoform 1 [Homo
sapiens]
Length = 496
Score = 48.1 bits (113), Expect = 1e-05
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 168 ISRRYSDFERLHRNLQRQFRGPMAAISFPRKRL-RRNFTAETIARRSRAFEQFLGHLQAV 226
+ RRY++F++L+ L++QF P A+ P KR+ NF + I +R +F+ +L
Sbjct: 47 VFRRYAEFDKLYNTLKKQF--PAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRY 104
Query: 227 PELRHAPDLQDF 238
PEL + PD++ F
Sbjct: 105 PELYNHPDVRAF 116
>gi|14249464 zinc finger and BTB domain containing 45 [Homo sapiens]
Length = 511
Score = 45.4 bits (106), Expect = 8e-05
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 12 SRLLHRLRHALAGDGPGE-AAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDE 70
++L HRLRH LA PG AA ++ P +L + S ++A DD
Sbjct: 147 AQLRHRLRHLLAARPPGHPGAAHSRKQRQPARLQLPAPPTPAKAEGPDADPSLSAAPDDR 206
Query: 71 DDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQ 105
DED+++ + D T GED E P +GQ
Sbjct: 207 GDEDDEESD---------DETDGEDGEGGGPGEGQ 232
>gi|154759293 cysteine-rich hydrophobic domain 1 [Homo sapiens]
Length = 224
Score = 42.0 bits (97), Expect = 9e-04
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 34 PEAEQFPESSELEDDDAEGL---SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDG 90
P +F SELE+++ E SS S + S + +DDE+DE+E++EE + +
Sbjct: 6 PNMAEFDTISELEEEEEEEAATSSSSPSSSSSVSGPDDDEEDEEEEEEEEEEE-----EE 60
Query: 91 TSGEDAERSPPPDGQWGSQLLARQLQD 117
E+ E +PPP + L R D
Sbjct: 61 EEEEEEEEAPPPPRVVSEEHLRRYAPD 87
>gi|75677335 digestive-organ expansion factor homolog [Homo sapiens]
Length = 756
Score = 41.2 bits (95), Expect = 0.002
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 8/72 (11%)
Query: 32 ASPEAEQFPESSELEDDDAEGLSS--------RLSGTLSFTSAEDDEDDEDEDDEEAGPD 83
A P+ Q ESS+ D +++ S RL TL S E++ED+E+E++E++ D
Sbjct: 42 AKPQICQLSESSDSSDSESDSESEPQQVSGYHRLLATLKNVSEEEEEDEEEEEEEDSIVD 101
Query: 84 QLPLGDGTSGED 95
+ D G D
Sbjct: 102 DAEMNDEDGGSD 113
>gi|17864088 sorting nexin 13 [Homo sapiens]
Length = 957
Score = 40.8 bits (94), Expect = 0.002
Identities = 24/104 (23%), Positives = 42/104 (40%)
Query: 135 VTSANVVKDPPSKYVLYTLAVIGPGPPDCQPAQISRRYSDFERLHRNLQRQFRGPMAAIS 194
++ V D Y LY + V + + RRYSDF H + QF + +
Sbjct: 565 ISDTGVCNDHGKTYALYAITVHRRNLNSEEMWKTYRRYSDFHDFHMRITEQFESLSSILK 624
Query: 195 FPRKRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDF 238
P K+ N + + +R + +L L A ++ +P L +
Sbjct: 625 LPGKKTFNNMDRDFLEKRKKDLNAYLQLLLAPEMMKASPALAHY 668
>gi|148728188 integrin, alpha E precursor [Homo sapiens]
Length = 1179
Score = 40.4 bits (93), Expect = 0.003
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 47 DDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQW 106
+DD ++R L ED E++EDE++EEAG + + DG+ D PPD Q
Sbjct: 168 EDDVN--TARQRRALEKEEEEDKEEEEDEEEEEAGTEIAIILDGSGSID-----PPDFQR 220
Query: 107 GSQLLARQLQDFWKK 121
++ +++F++K
Sbjct: 221 AKDFISNMMRNFYEK 235
>gi|19923723 ribosomal protein S6 kinase, 52kDa, polypeptide 1
isoform a [Homo sapiens]
Length = 1066
Score = 40.0 bits (92), Expect = 0.003
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 145 PSKYVLYTLA---VIGPGPPDCQPAQISRRYSDFERLHRNL----QRQFRGPMAAISFPR 197
P Y +Y + V P D Q + +RYSDF++LH+ L + FR F +
Sbjct: 24 PRGYTVYKVTARVVSRRNPEDVQEIIVWKRYSDFKKLHKELWQIHKNLFRHSELFPPFAK 83
Query: 198 KRLRRNFTAETIARRSRAFEQFLGHLQAVPELRHAPDLQDFF 239
+ F I R + E L +P L ++ L+DFF
Sbjct: 84 GIVFGRFDETVIEERRQCAEDLLQFSANIPALYNSKQLEDFF 125
>gi|239749996 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 487
Score = 39.7 bits (91), Expect = 0.004
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 19 RHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE 78
+H A +G +AA S + ++ E+ E E+D+ E E+DED+ED++DE
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE------------EKDEEDEDEEDDEDE 350
Query: 79 EAGPDQ 84
E G D+
Sbjct: 351 EDGDDE 356
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 39.3 bits (90), Expect = 0.006
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSGE 94
++E+ E E ED+D + + + A +DEDDED++D+E D + S E
Sbjct: 152 DSEEDEEDDEDEDEDEDEIEPAAMKAAAAAPASEDEDDEDDEDDEDDDDD---EEDDSEE 208
Query: 95 DAERSPPPDGQWGSQLL 111
+A + P G+ ++++
Sbjct: 209 EAMETTPAKGKKAAKVV 225
Score = 35.0 bits (79), Expect = 0.11
Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 15/53 (28%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEE 79
P +A E E E E EDDD + EDDEDD+DEDDEE
Sbjct: 226 PVKAKNVAEDEDEEEDDEDEDDDDD---------------EDDEDDDDEDDEE 263
Score = 30.8 bits (68), Expect = 2.1
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 24/95 (25%)
Query: 30 AAASPEAE----QFPESSELEDDDAEGLSS--------------------RLSGTLSFTS 65
AAA+P +E + E E +DDD E S +
Sbjct: 178 AAAAPASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDED 237
Query: 66 AEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSP 100
E+D++DED+DD+E D D E+ E P
Sbjct: 238 EEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEP 272
>gi|5031855 lymphocyte cytosolic protein 2 [Homo sapiens]
Length = 533
Score = 38.9 bits (89), Expect = 0.008
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 34 PEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGTSG 93
P+ +FPE +E ++D G SS + S DD+D ED+ D E+ ++ +
Sbjct: 86 PQVPRFPEETESHEEDNGGWSSFEED--DYESPNDDQDGEDDGDYESPNEE---EEAPVE 140
Query: 94 EDAERSPPP 102
+DA+ PPP
Sbjct: 141 DDADYEPPP 149
>gi|239744307 PREDICTED: similar to hCG1991922 [Homo sapiens]
Length = 486
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 13/66 (19%)
Query: 19 RHALAGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDE 78
+H A +G +AA S + ++ E+ E E+D+ E ++DED+ED++DE
Sbjct: 303 KHDAANNGVVKAAKSKKKKEEEENEEDEEDEEE-------------EKDEDEDEEDDEDE 349
Query: 79 EAGPDQ 84
E G D+
Sbjct: 350 EDGDDE 355
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 38.9 bits (89), Expect = 0.008
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 23 AGDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGP 82
A GP E AA+ A S E E+++ E L AEDDED++D++D++
Sbjct: 1655 AAPGPREGAAAAAAAAGESSQEDEEEELE---------LPEEEAEDDEDEDDDEDDDDED 1705
Query: 83 DQLPLGDGTSGEDAERSPP 101
D D D+E S P
Sbjct: 1706 DDEDDDDEDLRTDSEESLP 1724
>gi|23238244 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 168 ISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVP 227
+ RRY+DF RL+ L+ F G A+ P++ + N+ A+ + R + FL +L A
Sbjct: 141 VFRRYTDFSRLNDKLKEMFPGFRLALP-PKRWFKDNYNADFLEDRQLGLQAFLQNLVAHK 199
Query: 228 ELRHAPDLQDFFVLPE 243
++ + +++F L +
Sbjct: 200 DIANCLAVREFLCLDD 215
>gi|23238246 sorting nexin 16 isoform a [Homo sapiens]
Length = 344
Score = 38.9 bits (89), Expect = 0.008
Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 168 ISRRYSDFERLHRNLQRQFRGPMAAISFPRKRLRRNFTAETIARRSRAFEQFLGHLQAVP 227
+ RRY+DF RL+ L+ F G A+ P++ + N+ A+ + R + FL +L A
Sbjct: 141 VFRRYTDFSRLNDKLKEMFPGFRLALP-PKRWFKDNYNADFLEDRQLGLQAFLQNLVAHK 199
Query: 228 ELRHAPDLQDFFVLPE 243
++ + +++F L +
Sbjct: 200 DIANCLAVREFLCLDD 215
>gi|25777744 hypothetical protein LOC267004 [Homo sapiens]
Length = 593
Score = 38.5 bits (88), Expect = 0.010
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 23/127 (18%)
Query: 15 LHRLRHALAGDGPGEAAA----SPEAEQFPESSELEDDDAEGLSSRLSGTLSFTS----- 65
LH + L D EA+A PE P S E D+ G + L G+L T+
Sbjct: 7 LHEITDLLETDDSIEASAIVIQPPENATAPVSDEESGDEEGGTINNLPGSLLHTAAYLIQ 66
Query: 66 ----AEDDEDDEDEDDEEAGPDQLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKK 121
AE D DD ++ PD++P S ++ PP + +++L + WKK
Sbjct: 67 DGSDAESDSDDPSYAPKDDSPDEVP-----STFTVQQPPPSRRRKMTKILCK-----WKK 116
Query: 122 SRNTLAP 128
+ T+ P
Sbjct: 117 ADLTVQP 123
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.010
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 629 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 686
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.010
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 646 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 698
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 629 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 686
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 38.5 bits (88), Expect = 0.010
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 35 EAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDD--------EDDEDEDDEE 79
E E + E E+DD G SS G S +S+ED+ EDDEDEDD+E
Sbjct: 683 EDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDE 735
Score = 33.9 bits (76), Expect = 0.24
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 54 SSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLPLGDGT--SGEDAERSPPPDGQWGSQ 109
SSR + S EDDE+DED++DE+ + GD + G+ +E S + + G +
Sbjct: 666 SSRTTLQSKSESEEDDEEDEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDE 723
>gi|148762982 hypothetical protein LOC387640 [Homo sapiens]
Length = 908
Score = 38.5 bits (88), Expect = 0.010
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 24 GDGPGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPD 83
G P ++ E+ + + + + D LSS + S E+ E++E+E++EE G
Sbjct: 373 GSFPESCSSDSESSSYSDHAANDSDFGSSLSSSSNSVSSEEEEEEGEEEEEEEEEEGGSG 432
Query: 84 QLPLGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWK----KSRNTLAPQRLLFEVTSAN 139
+ S E+ + S D GS ++ Q F + K + A L+ + SA
Sbjct: 433 ASDSSE-VSSEEEDSSTESDSSSGSSQVSVQSIRFRRTSFCKPPSVQAQANFLYHLASAA 491
Query: 140 VVKDP 144
P
Sbjct: 492 AATKP 496
>gi|195546900 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 38.1 bits (87), Expect = 0.013
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDIL 100
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
+ + + + + G AR+LQ+ W+ R
Sbjct: 101 EKEEIEASNIDNVVLDEDRSG----ARRLQNLWRDQR 133
>gi|161169023 suppressor of Ty 5 homolog isoform a [Homo sapiens]
Length = 1087
Score = 38.1 bits (87), Expect = 0.013
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 27 PGEAAASPEAEQFPESSELEDDDAEGLSSRLSGTLSFTSAEDDEDDEDEDDEEAGPDQLP 86
P + E E++ E E EDDD R G + A+ D++ EDED E G + +
Sbjct: 42 PEDEEEEEEEEEYDEEEEEEDDDRPPKKPRHGGFI-LDEADVDDEYEDEDQWEDGAEDIL 100
Query: 87 LGDGTSGEDAERSPPPDGQWGSQLLARQLQDFWKKSR 123
+ + + + + G AR+LQ+ W+ R
Sbjct: 101 EKEEIEASNIDNVVLDEDRSG----ARRLQNLWRDQR 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,318,673
Number of Sequences: 37866
Number of extensions: 877959
Number of successful extensions: 9328
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 255
Number of HSP's that attempted gapping in prelim test: 6757
Number of HSP's gapped (non-prelim): 1472
length of query: 373
length of database: 18,247,518
effective HSP length: 104
effective length of query: 269
effective length of database: 14,309,454
effective search space: 3849243126
effective search space used: 3849243126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.