Guide to the Human Genome
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Name: SNX13 Sequence: fasta or formatted (957aa) NCBI GI: 17864088
Description:

sorting nexin 13

Referenced in:

ER, Golgi, and the Secretory Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         48           3
 C cysteine            1.1         11           1
 D aspartate           7.6         73           2
 E glutamate           6.1         58           2
 F phenylalanine       5.3         51           2
 G glycine             4.6         44           3
 H histidine           1.7         16           1
 I isoleucine          5.4         52           2
 K lysine              6.5         62           2
 L leucine            11.5        110           3
 M methionine          3.2         31           2
 N asparagine          4.6         44           2
 P proline             3.7         35           2
 Q glutamine           5.3         51           3
 R arginine            6.6         63           2
 S serine              5.9         56           2
 T threonine           5.2         50           2
 V valine              6.0         57           2
 W tryptophan          1.0         10           1
 Y tyrosine            3.7         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 13 
SNX25                 0.094   sorting nexin 25 
SNX14                 0.031   sorting nexin 14 isoform a 
SNX19                 0.020   sorting nexin 19 
NISCH                 0.017   nischarin 
SNX14                 0.016   sorting nexin 14 isoform b 
PXK                   0.015   PX domain containing serine/threonine kinase 
RGS20                 0.014   regulator of G-protein signaling 20 isoform b 
RGS20                 0.014   regulator of G-protein signaling 20 isoform a 
RGS11                 0.013   regulator of G-protein signalling 11 isoform 1 [Homo...
RGS11                 0.013   regulator of G-protein signalling 11 isoform 2 
RGS1                  0.013   regulator of G-protein signalling 1 
SNX16                 0.013   sorting nexin 16 isoform a 
SNX16                 0.013   sorting nexin 16 isoform a 
SNX29                 0.013   sorting nexin 29 
SGK3                  0.012   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.012   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.012   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
RGS12                 0.011   regulator of G-protein signalling 12 isoform 2 
RGS12                 0.011   regulator of G-protein signalling 12 isoform 1 [Homo...
RGS12                 0.011   regulator of G-protein signalling 12 isoform 3 [Homo...
AKAP10                0.011   A-kinase anchor protein 10 precursor 
RGS17                 0.011   regulator of G-protein signalling 17 
KIF16B                0.011   kinesin-like motor protein C20orf23 
SNX1                  0.010   sorting nexin 1 isoform c 
SNX1                  0.010   sorting nexin 1 isoform a 
RGS4                  0.009   regulator of G-protein signaling 4 isoform 3 
RGS4                  0.009   regulator of G-protein signaling 4 isoform 2 
RGS4                  0.009   regulator of G-protein signaling 4 isoform 1 
SNX33                 0.009   sorting nexin 33 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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