Guide to the Human Genome
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Name: SNX16 Sequence: fasta or formatted (344aa) NCBI GI: 23238244
Description:

sorting nexin 16 isoform a

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [344aa] sorting nexin 16 isoform a
alt prot [315aa] sorting nexin 16 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         17           1
 C cysteine            1.5          5           1
 D aspartate           6.4         22           2
 E glutamate          12.2         42           2
 F phenylalanine       4.7         16           1
 G glycine             2.9         10           1
 H histidine           0.6          2           1
 I isoleucine          2.9         10           1
 K lysine              5.8         20           2
 L leucine             9.6         33           2
 M methionine          2.0          7           1
 N asparagine          5.2         18           1
 P proline             5.8         20           2
 Q glutamine           3.8         13           1
 R arginine            5.5         19           2
 S serine             10.8         37           3
 T threonine           6.4         22           2
 V valine              5.8         20           2
 W tryptophan          0.9          3           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sorting nexin 16 isoform a 
SNX16                 1.000   sorting nexin 16 isoform a 
SNX16                 0.887   sorting nexin 16 isoform b 
SGK3                  0.107   serum/glucocorticoid regulated kinase 3 isoform 2 [H...
SGK3                  0.107   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
SGK3                  0.107   serum/glucocorticoid regulated kinase 3 isoform 1 [H...
PXK                   0.054   PX domain containing serine/threonine kinase 
SNX1                  0.041   sorting nexin 1 isoform c 
SNX1                  0.041   sorting nexin 1 isoform a 
SNX13                 0.036   sorting nexin 13 
SNX14                 0.035   sorting nexin 14 isoform b 
SNX14                 0.035   sorting nexin 14 isoform a 
SNX29                 0.035   sorting nexin 29 
SNX1                  0.032   sorting nexin 1 isoform b 
SNX2                  0.027   sorting nexin 2 
SNX7                  0.027   sorting nexin 7 isoform b 
SNX7                  0.027   sorting nexin 7 isoform a 
CENPF                 0.027   centromere protein F 
SNX4                  0.026   sorting nexin 4 
SNX19                 0.026   sorting nexin 19 
SNX18                 0.026   sorting nexin 18 isoform c 
SNX18                 0.026   sorting nexin 18 isoform a 
SNX18                 0.026   sorting nexin 18 isoform b 
SNX33                 0.026   sorting nexin 33 
NISCH                 0.023   nischarin 
CCDC88A               0.021   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.021   coiled-coil domain containing 88A isoform 1 
SNX30                 0.021   sorting nexin family member 30 
SNX21                 0.021   sorting nexin 21 isoform a 
LOC728897             0.020   PREDICTED: similar to coiled-coil domain containing...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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