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Search of human proteins with 154448884
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|154448884 potassium voltage-gated channel, Isk-related
family, member 4 [Homo sapiens]
(170 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|154448884 potassium voltage-gated channel, Isk-related family... 335 1e-92
gi|189095241 potassium voltage-gated channel, Isk-related family... 41 6e-04
gi|189095239 potassium voltage-gated channel, Isk-related family... 41 6e-04
gi|189095237 potassium voltage-gated channel, Isk-related family... 41 6e-04
gi|60218915 potassium voltage-gated channel, Isk-related family,... 41 6e-04
gi|4885443 potassium voltage-gated channel, Isk-related family, ... 37 0.008
gi|19923308 melanoma antigen family A, 8 [Homo sapiens] 34 0.069
gi|156671215 epsin 2 isoform b [Homo sapiens] 34 0.069
gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens] 32 0.26
gi|6912442 potassium voltage-gated channel, Isk-related family, ... 31 0.45
gi|83367077 mucin 16 [Homo sapiens] 31 0.59
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 31 0.59
gi|164419758 bromodomain containing 2 [Homo sapiens] 30 1.0
gi|4826806 bromodomain containing 2 [Homo sapiens] 30 1.0
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 30 1.0
gi|68348723 zinc finger protein 711 [Homo sapiens] 30 1.0
gi|27436978 potassium voltage-gated channel, Isk-related family,... 29 1.7
gi|117938328 l(3)mbt-like isoform I [Homo sapiens] 29 1.7
gi|117938330 l(3)mbt-like isoform II [Homo sapiens] 29 1.7
gi|218505703 von Willebrand factor A domain containing 3A [Homo ... 29 2.2
gi|156671217 epsin 2 isoform a [Homo sapiens] 29 2.2
gi|42740903 MTERF domain containing 2 [Homo sapiens] 28 2.9
gi|38044112 restin isoform b [Homo sapiens] 28 2.9
gi|4506751 restin isoform a [Homo sapiens] 28 2.9
gi|55769587 probable nucleolar complex protein 14 [Homo sapiens] 28 3.8
gi|126116565 MYC binding protein 2 [Homo sapiens] 28 3.8
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 28 3.8
gi|55741677 SET domain containing 1A [Homo sapiens] 28 5.0
gi|119395716 forkhead box C1 [Homo sapiens] 28 5.0
gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens] 28 5.0
>gi|154448884 potassium voltage-gated channel, Isk-related family,
member 4 [Homo sapiens]
Length = 170
Score = 335 bits (859), Expect = 1e-92
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MLKMEPLNSTHPGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKS 60
MLKMEPLNSTHPGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKS
Sbjct: 1 MLKMEPLNSTHPGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKS 60
Query: 61 KRREKKSSLLLLYKDEERLWGEAMKPLPVVSGLRSVQVPLMLNMLQESVAPALSCTLCSM 120
KRREKKSSLLLLYKDEERLWGEAMKPLPVVSGLRSVQVPLMLNMLQESVAPALSCTLCSM
Sbjct: 61 KRREKKSSLLLLYKDEERLWGEAMKPLPVVSGLRSVQVPLMLNMLQESVAPALSCTLCSM 120
Query: 121 EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQNS 170
EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQNS
Sbjct: 121 EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQNS 170
>gi|189095241 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 40.8 bits (94), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 35 EYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
E Y+L+V+ F+G F +GIML Y++SK+ E + +Y + + W E K
Sbjct: 43 EALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESD-AWQEKDK 92
>gi|189095239 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 40.8 bits (94), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 35 EYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
E Y+L+V+ F+G F +GIML Y++SK+ E + +Y + + W E K
Sbjct: 43 EALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESD-AWQEKDK 92
>gi|189095237 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 40.8 bits (94), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 35 EYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
E Y+L+V+ F+G F +GIML Y++SK+ E + +Y + + W E K
Sbjct: 43 EALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESD-AWQEKDK 92
>gi|60218915 potassium voltage-gated channel, Isk-related family,
member 1 [Homo sapiens]
Length = 129
Score = 40.8 bits (94), Expect = 6e-04
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 35 EYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
E Y+L+V+ F+G F +GIML Y++SK+ E + +Y + + W E K
Sbjct: 43 EALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIESD-AWQEKDK 92
>gi|4885443 potassium voltage-gated channel, Isk-related family,
member 3 [Homo sapiens]
Length = 103
Score = 37.0 bits (84), Expect = 0.008
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 12 PGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLL 71
PG + E RA+ G + N Y YIL VM + + + ++LGY +S++ +K+S
Sbjct: 35 PGLGPDNQTEERRASLPGRDD-NSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYH 93
Query: 72 LY 73
+Y
Sbjct: 94 VY 95
>gi|19923308 melanoma antigen family A, 8 [Homo sapiens]
Length = 318
Score = 33.9 bits (76), Expect = 0.069
Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 73 YKDEERLWGEAMKPLPVVSGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSP 132
YK EE L + P GL VQ+P +E A + S TL + V+ +S SP
Sbjct: 10 YKAEEGLQAQGEAP-----GLMDVQIPTA----EEQKAASSSSTLIMGTLEEVT-DSGSP 59
Query: 133 DVHLTIQEEGADDELEETSETPLNESSEGSSEN 165
+ EGA L T T ++S EGSS N
Sbjct: 60 SPPQS--PEGASSSLTVTDSTLWSQSDEGSSSN 90
>gi|156671215 epsin 2 isoform b [Homo sapiens]
Length = 641
Score = 33.9 bits (76), Expect = 0.069
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 63 REKKSSLLLLYKDEERLWGEAMKPL-------PVVSGLRSVQVPLMLNMLQESVAPALSC 115
REK L+ L KDEERL E + L V +G+ S Q+ Q +++ + S
Sbjct: 124 REKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSE 183
Query: 116 TLCSMEGDSVSSESSSPDVHLTIQEE-----GADDELEETSE 152
G S +S SP+ L Q G +EL+ S+
Sbjct: 184 QEYGKAGGSPASYHGSPEASLCPQHRTGAPLGQSEELQPLSQ 225
>gi|157412255 praja 2, RING-H2 motif containing [Homo sapiens]
Length = 708
Score = 32.0 bits (71), Expect = 0.26
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 145 DELEETSETPLNESSEGSSENIHQNS 170
DE EE PL +SS G +E +HQNS
Sbjct: 228 DEFEELDSVPLVKSSAGDTEFVHQNS 253
>gi|6912442 potassium voltage-gated channel, Isk-related family,
member 1-like [Homo sapiens]
Length = 142
Score = 31.2 bits (69), Expect = 0.45
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 13 GTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKSKR 62
G P R G+ + Y YIL++M FY G++L Y +S++
Sbjct: 38 GMGVVPDPFVGREVTSAKGD-DAYLYILLIMIFYACLAGGLILAYTRSRK 86
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.8 bits (68), Expect = 0.59
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 88 PVVSGLRSVQVPLMLNMLQESVAPA--LSCTLCSMEGDSVSSESSSPDVHLTIQEEGADD 145
P L P +++L + AP +S T+ +M +S+S+ + +P+V ++ +
Sbjct: 3511 PTAGHLSQTSSPAEVSILDVTTAPTPGISTTITTMGTNSISTTTPNPEVGMSTMDSTPAT 3570
Query: 146 ELEETS-ETPLNESSEGSSEN 165
E TS E P SS +S++
Sbjct: 3571 ERRTTSTEHPSTWSSTAASDS 3591
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 30.8 bits (68), Expect = 0.59
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 3 KMEPLNSTHPGTAA-----SSSPLESRAAGGGSGNG 33
K L+ST PG++A +SSP S AGGG G G
Sbjct: 25 KYSALHSTSPGSSAPIAPSASSPSSSSNAGGGGGGG 60
>gi|164419758 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 109 VAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQ 168
V+ A+ L +S S ESSS +EE +DE EE SE SS+ E H+
Sbjct: 465 VSTAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESE-----SSDSEEERAHR 519
>gi|4826806 bromodomain containing 2 [Homo sapiens]
Length = 801
Score = 30.0 bits (66), Expect = 1.0
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 109 VAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQ 168
V+ A+ L +S S ESSS +EE +DE EE SE SS+ E H+
Sbjct: 465 VSTAMPPGLAKSSSESSSEESSSESSSEEEEEEDEEDEEEEESE-----SSDSEEERAHR 519
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 30.0 bits (66), Expect = 1.0
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 82 EAMKPLPV-VSGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQE 140
E+ PL GL S Q P + +E+ C C + ++PDV + ++E
Sbjct: 360 ESCSPLSESAKGLESEQAPKLGLRAEENPMVGALCGQCGSLQGGAAEGPAAPDVVVVLEE 419
Query: 141 EGADDEL 147
E DD L
Sbjct: 420 EALDDAL 426
>gi|68348723 zinc finger protein 711 [Homo sapiens]
Length = 761
Score = 30.0 bits (66), Expect = 1.0
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 111 PALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQN 169
P + T+ + + D +S+S D +L I + ++LE TPL S+GS E+ ++
Sbjct: 180 PGSTVTIKTEDDDDDDVKSTSED-YLMISLDDVGEKLEHMGNTPLKIGSDGSQEDAKED 237
>gi|27436978 potassium voltage-gated channel, Isk-related family,
member 2 [Homo sapiens]
Length = 123
Score = 29.3 bits (64), Expect = 1.7
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 34 NEYFYILVVMSFYGIF---LIGIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMK 85
N Y+ IL +M G+F ++ I++ +KSKRRE + Y E+ W E K
Sbjct: 45 NFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYIVED--WQEKYK 97
>gi|117938328 l(3)mbt-like isoform I [Homo sapiens]
Length = 772
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 121 EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSS 163
E S S E S P+ + QEEG D E + T+ TP ES E SS
Sbjct: 155 EYQSPSEEESEPEA-MEKQEEGKDPEGQPTASTP--ESEEWSS 194
>gi|117938330 l(3)mbt-like isoform II [Homo sapiens]
Length = 738
Score = 29.3 bits (64), Expect = 1.7
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 121 EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSS 163
E S S E S P+ + QEEG D E + T+ TP ES E SS
Sbjct: 155 EYQSPSEEESEPEA-MEKQEEGKDPEGQPTASTP--ESEEWSS 194
>gi|218505703 von Willebrand factor A domain containing 3A [Homo
sapiens]
Length = 1184
Score = 28.9 bits (63), Expect = 2.2
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 52 GIMLGYMKSKRREKKSSLLLLYKDEERLWGEAMKPLPVVSGLR 94
G+M K+K RE ++SLLL Y ++ G K P GLR
Sbjct: 803 GMMELRRKTKSREAETSLLLFYTEKGNDVGSVYKKYPQGRGLR 845
>gi|156671217 epsin 2 isoform a [Homo sapiens]
Length = 584
Score = 28.9 bits (63), Expect = 2.2
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 63 REKKSSLLLLYKDEERLWGEAMKPL-------PVVSGLRSVQVPLMLNMLQESVAPALSC 115
REK L+ L KDEERL E + L V +G+ S Q+ Q +++ + S
Sbjct: 124 REKSKQLVALLKDEERLKAERAQALKTKERMAQVATGMGSNQITFGRGSSQPNLSTSHSE 183
Query: 116 TLCSMEGDSVSS--ESSSPDVHLTIQEEGADDELEETSETPL 155
G S +S S+SP V +++ EE + L
Sbjct: 184 QEYGKAGGSPASYHGSTSPRVSSELEQARPQTSGEEELQLQL 225
>gi|42740903 MTERF domain containing 2 [Homo sapiens]
Length = 381
Score = 28.5 bits (62), Expect = 2.9
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 88 PVVSGLRSVQVPLMLNMLQESVAPALSCTLCS-----------MEGDSVSSESSSPDVHL 136
P G + PL+ ++L+ S A L+ T C+ + + SESS+ D
Sbjct: 277 PDKKGQTQIPNPLLKDILRVSEAEFLARTACTSVEEFQVFKKLLAREEEESESSTSDDKR 336
Query: 137 TIQEEGADDELEETSETPLNESSEGSSEN 165
+E DD+ EE ++ N+ + ++
Sbjct: 337 ASLDEDEDDDDEEDNDEDDNDEDDDDEDD 365
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 94 RSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEETSET 153
R VQ N LQ + A + LC+ VSS S+P I ++ + +E S T
Sbjct: 126 RKVQAEDEANGLQTTPASRATSPLCTSTASMVSSSPSTPS---NIPQKPSQPAAKEPSAT 182
Query: 154 -PLNESSEGSSENI 166
P++ ++ +SE+I
Sbjct: 183 PPISNLTKTASESI 196
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 28.5 bits (62), Expect = 2.9
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 94 RSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESSSPDVHLTIQEEGADDELEETSET 153
R VQ N LQ + A + LC+ VSS S+P I ++ + +E S T
Sbjct: 126 RKVQAEDEANGLQTTPASRATSPLCTSTASMVSSSPSTPS---NIPQKPSQPAAKEPSAT 182
Query: 154 -PLNESSEGSSENI 166
P++ ++ +SE+I
Sbjct: 183 PPISNLTKTASESI 196
>gi|55769587 probable nucleolar complex protein 14 [Homo sapiens]
Length = 857
Score = 28.1 bits (61), Expect = 3.8
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 71 LLYKDEERLWGEAMKPLPVVSGLRSVQVPLMLNMLQESVAPALSCTLCSMEGDSVSSESS 130
+L KD+ RL L G +V+ + +E+ P + G + ES
Sbjct: 322 VLDKDDRRL-------LSYKDGKMNVEEDVQEEQSKEASDPESNEEEGDSSGGEDTEESD 374
Query: 131 SPDVHLTIQEEGADDELEETSETPLNESSE 160
SPD HL ++ ++ E EE +E P E +
Sbjct: 375 SPDSHLDLE---SNVESEEENEKPAKEQRQ 401
>gi|126116565 MYC binding protein 2 [Homo sapiens]
Length = 4640
Score = 28.1 bits (61), Expect = 3.8
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 80 WGEAMKPLPVVSGL---------RSVQVPLMLNMLQESVAPAL 113
WGE + L +S + +++QVP +LN LQ SV L
Sbjct: 251 WGETGRTLQAISAILTNNGSHACQTIQVPTILNSLQRSVQAVL 293
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin
(with transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 28.1 bits (61), Expect = 3.8
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 58 MKSKRREKKSSLLLLYKDEERLWGEAMKPLPVVSGLRSV--QVPLMLNMLQESVAPALSC 115
++ KR E+ +L K+ +++ GE + P+ + L PLM N +ES PA+
Sbjct: 580 LQGKRAEEADHEVLDQKEMKQMEGEGIAPIKMKVFLEDTGQDFPLMPN--EESSLPAVEK 637
Query: 116 TLCSMEGDSVSSESSS 131
S E S +SE S
Sbjct: 638 EQASTEHQSRTSEEIS 653
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 27.7 bits (60), Expect = 5.0
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 121 EGDSVSSESSSPDVHLTIQEEGADDELEETSETPLNESSEGSSENIHQNS 170
EG+ S ESSS +E+ D++ EE +T E+ E+ +S
Sbjct: 964 EGEEASQESSSEKDEEDDEEDEEDEDREEAVDTTKKETEVSDGEDEESDS 1013
>gi|119395716 forkhead box C1 [Homo sapiens]
Length = 553
Score = 27.7 bits (60), Expect = 5.0
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 6 PLNSTHPGTAASSSPLESRAAGGGSGNGNE 35
P S P T++SSS L GGG G G E
Sbjct: 429 PDYSLPPVTSSSSSSLSHGGGGGGGGGGQE 458
>gi|7662068 protocadherin alpha 9 isoform 2 precursor [Homo sapiens]
Length = 842
Score = 27.7 bits (60), Expect = 5.0
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 14/143 (9%)
Query: 6 PLNSTHPGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREK 65
PL+S P AS + + A + NEYF++ V S + +G++L + +
Sbjct: 147 PLDSRFPLEGASDADIGENALLTYRLSPNEYFFLDVPTSNQQVKPLGLVLRKLLDREETP 206
Query: 66 KSSLLLLYKD--EERLWGEAMKPLPVVSG----------LRSVQVPLMLNMLQESVAPAL 113
+ LLL D + L G + V+ L +V++P +++ + P
Sbjct: 207 ELHLLLTATDGGKPELTGTVQLLITVLDNNDNAPVFDRTLYTVKLPENVSIGTLVIHPNA 266
Query: 114 SCTLCSMEGDSVSSESS--SPDV 134
S + GD + S SS SPD+
Sbjct: 267 SDLDEGLNGDIIYSFSSDVSPDI 289
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,722,341
Number of Sequences: 37866
Number of extensions: 287134
Number of successful extensions: 1518
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1466
Number of HSP's gapped (non-prelim): 64
length of query: 170
length of database: 18,247,518
effective HSP length: 95
effective length of query: 75
effective length of database: 14,650,248
effective search space: 1098768600
effective search space used: 1098768600
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.