Guide to the Human Genome
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Name: KCNE1L Sequence: fasta or formatted (142aa) NCBI GI: 6912442
Description:

potassium voltage-gated channel, Isk-related family, member 1-like

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.5         22           3
 C cysteine            2.1          3           1
 D aspartate           3.5          5           2
 E glutamate           7.7         11           1
 F phenylalanine       1.4          2           1
 G glycine            11.3         16           2
 H histidine           2.1          3           2
 I isoleucine          2.8          4           1
 K lysine              2.1          3           1
 L leucine            13.4         19           3
 M methionine          2.8          4           1
 N asparagine          1.4          2           1
 P proline             4.9          7           1
 Q glutamine           3.5          5           1
 R arginine            7.7         11           2
 S serine              7.0         10           1
 T threonine           2.8          4           1
 V valine              4.2          6           2
 W tryptophan          0.7          1           1
 Y tyrosine            2.8          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, Isk-related family, ... 
KCNE3                 0.081   potassium voltage-gated channel, Isk-related family, ...
KCNE1                 0.031   potassium voltage-gated channel, Isk-related family...
KCNE1                 0.031   potassium voltage-gated channel, Isk-related family...
KCNE1                 0.031   potassium voltage-gated channel, Isk-related family...
KCNE1                 0.031   potassium voltage-gated channel, Isk-related family,...
KCNE4                 0.023   potassium voltage-gated channel, Isk-related family...
XPC                   0.019   xeroderma pigmentosum, complementation group C isof...
XPC                   0.019   xeroderma pigmentosum, complementation group C isof...
CD7                   0.012   CD7 antigen precursor 
NAP1L5                0.012   nucleosome assembly protein 1-like 5 
ANKRD36               0.012   PREDICTED: ankyrin repeat domain 36 
LOC100134365          0.008   PREDICTED: similar to ankyrin repeat domain 36 [Hom...
LRRC8B                0.008   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.008   leucine rich repeat containing 8 family, member B [H...
RUNDC1                0.008   RUN domain containing 1 
BTBD2                 0.008   BTB (POZ) domain containing 2 
P2RX5                 0.008   purinergic receptor P2X5 isoform C 
P2RX5                 0.008   purinergic receptor P2X5 isoform A 
SLC12A8               0.008   solute carrier family 12, member 8 
GBX2                  0.008   gastrulation brain homeo box 2 
LOC643321             0.008   PREDICTED: similar to hCG1644292 
LOC643321             0.008   PREDICTED: similar to hCG1644292 
CHST2                 0.008   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer...
RP1L1                 0.008   retinitis pigmentosa 1-like 1 
BTBD11                0.008   BTB (POZ) domain containing 11 isoform a 
MAN1A1                0.004   mannosidase, alpha, class 1A, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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