Guide to the Human Genome
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Name: KCNE1 Sequence: fasta or formatted (129aa) NCBI GI: 189095241
Description:

potassium voltage-gated channel, Isk-related family, member 1

Referenced in:

Potassium Channels

Other entries for this name:
alt mRNA [129aa] potassium voltage-gated channel, Isk-related family, member 1
alt mRNA [129aa] potassium voltage-gated channel, Isk-related family, member 1
alt mRNA [129aa] potassium voltage-gated channel, Isk-related family, member 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          7           1
 C cysteine            0.8          1           1
 D aspartate           3.1          4           1
 E glutamate           7.0          9           1
 F phenylalanine       4.7          6           2
 G glycine             5.4          7           2
 H histidine           2.3          3           1
 I isoleucine          3.9          5           1
 K lysine              5.4          7           2
 L leucine            10.9         14           1
 M methionine          3.1          4           1
 N asparagine          4.7          6           1
 P proline             5.4          7           1
 Q glutamine           4.7          6           2
 R arginine            4.7          6           2
 S serine              9.3         12           2
 T threonine           6.2          8           2
 V valine              7.0          9           2
 W tryptophan          1.6          2           1
 Y tyrosine            4.7          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium voltage-gated channel, Isk-related family... 
KCNE1                 1.000   potassium voltage-gated channel, Isk-related family...
KCNE1                 1.000   potassium voltage-gated channel, Isk-related family...
KCNE1                 1.000   potassium voltage-gated channel, Isk-related family,...
KCNE2                 0.126   potassium voltage-gated channel, Isk-related family,...
KCNE4                 0.067   potassium voltage-gated channel, Isk-related family...
KCNE3                 0.050   potassium voltage-gated channel, Isk-related family, ...
KCNE1L                0.034   potassium voltage-gated channel, Isk-related family, ...
LOC100287092          0.017   PREDICTED: hypothetical protein XP_002343922 
IL6ST                 0.013   interleukin 6 signal transducer isoform 1 precursor ...
LOC727788             0.013   PREDICTED: hypothetical protein 
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.004   calcium channel, voltage-dependent, L type, alpha 1...
PPIG                  0.004   peptidylprolyl isomerase G 
GPR34                 0.004   G protein-coupled receptor 34 
GPR34                 0.004   G protein-coupled receptor 34 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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