Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: VWA3A Sequence: fasta or formatted (1184aa) NCBI GI: 218505703
Description:

von Willebrand factor A domain containing 3A

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         68           3
 C cysteine            2.4         28           2
 D aspartate           4.9         58           2
 E glutamate           6.3         75           2
 F phenylalanine       3.2         38           1
 G glycine             5.1         60           2
 H histidine           2.9         34           1
 I isoleucine          5.0         59           2
 K lysine              7.4         88           2
 L leucine            11.7        138           3
 M methionine          2.5         30           2
 N asparagine          3.0         36           2
 P proline             4.6         54           2
 Q glutamine           5.7         67           3
 R arginine            5.2         62           2
 S serine              9.5        112           3
 T threonine           5.6         66           2
 V valine              5.2         61           3
 W tryptophan          1.8         21           1
 Y tyrosine            2.4         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   von Willebrand factor A domain containing 3A 
VWA3B                 0.064   von Willebrand factor A domain containing 3B 
ITIH4                 0.014   inter-alpha (globulin) inhibitor H4 
ITIH2                 0.013   inter-alpha globulin inhibitor H2 polypeptide 
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor ...
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5L                0.010   inter-alpha (globulin) inhibitor H5-like 
ITIH3                 0.008   inter-alpha (globulin) inhibitor H3 preproprotein [...
ITIH1                 0.008   inter-alpha (globulin) inhibitor H1 
VWA5A                 0.007   BCSC-1 isoform 1 
VWA5A                 0.007   BCSC-1 isoform 1 
CLCA1                 0.006   chloride channel accessory 1 precursor 
OTOA                  0.006   otoancorin isoform 3 
OTOA                  0.006   otoancorin isoform 2 
OTOA                  0.006   otoancorin isoform 1 
VWA5A                 0.005   BCSC-1 isoform 2 
ITGAM                 0.004   integrin alpha M isoform 1 precursor 
ITGAM                 0.004   integrin alpha M isoform 2 precursor 
NAV2                  0.004   neuron navigator 2 isoform 3 
NAV2                  0.004   neuron navigator 2 isoform 1 
NAV2                  0.004   neuron navigator 2 isoform 2 
SYT6                  0.003   synaptotagmin VI 
RUSC1                 0.003   RUN and SH3 domain containing 1 isoform b 
RUSC1                 0.003   RUN and SH3 domain containing 1 isoform a 
CUX2                  0.003   cut-like 2 
VWA5B1                0.003   von Willebrand factor A domain containing 5B1 [Homo...
PCNT                  0.003   pericentrin 
RASA1                 0.003   RAS p21 protein activator 1 isoform 1 
RASA1                 0.003   RAS p21 protein activator 1 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press